Query= MSMg01no313_m12.b1 MSMg01no313_m12.b1 CHROMAT_FILE:
MSMg01no313_m12.b1 PHD_FILE: MSMg01no313_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:52 2005
(738 letters)
>mm_chr5_12416706_12417843
Length = 1138
Score = 1367 bits (707), Expect = 0.0
Identities = 725/731 (99%), Gaps = 2/731 (0%)
Strand = Plus / Minus
Query: 1 aattaagccccattagaaagagtccagagtggacttggcttacattgactttactcttac 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aattaagctccattagaaagagtccagagtggacttggcttacattgactttactcttac 671
Query: 61 ttgactagaatttttattcctgtaatttttcattatatatgtgaaataaataaaacattt 120
|||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 670 ttgaatagtatttttattcctgtaa-ttttcattatatatgtgaaataaataaaacattt 612
Query: 121 catcaaatgatattttcaatgtctgaaactccttagctaactcataatatatggaagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 catcaaatgatattttcaatgtctgaaactccttagctaactcataatatatggaagcat 552
Query: 181 actaagaatcttggatgatcttcgattgctatacaatatgtttacatagcactttgatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 actaagaatcttggatgatcttcgattgctatacaatatgtttacatagcactttgatca 492
Query: 241 caactgtgtttgctgactctcacacactagcacattgcaaactgttggggctatgagcat 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 491 caactgtgtttgctgactctcacacactagcacattgcaaacagttggggctatgagcat 432
Query: 301 ggcaggaaagcaatggtaaacacaacagaatattttgcagaactttatggtaaactgcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggcaggaaagcaatggtaaacacaacagaatattttgcagaactttatggtaaactgcct 372
Query: 361 catgactatcatgctacttaaaactactttttaatttcttattttgatgaactgaatgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catgactatcatgctacttaaaactactttttaatttcttattttgatgaactgaatgtt 312
Query: 421 gtttcc-ttttttttaacacagaataactatatcatttaaacaactaataaacaatacat 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtttcctttttttttaacacagaataactatatcatttaaacaactaataaacaatacat 252
Query: 480 taaaataatttcgttgtttaggtaattgtgcttagctgattatcttacacttttattatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaaataatttcgttgtttaggtaattgtgcttagctgattatcttacacttttattatt 192
Query: 540 attttttttactaagtattttcttcatttacatttccaatgctatcccaaaagtccccca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 attttttttactaagtattttcttcatttacatttccaatgctatcccaaaagtccccca 132
Query: 600 tacccttcccccccactcccctacccacccattcccaatgaatgttgtttcctttgtccc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tacccttcccccccactcccctacccacccattcccaatgaatgttgtttcctttgtccc 72
Query: 660 tttttgaagataactcaagtaaagattcccatgtttatccatgatatataatttgcaaaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tttttgaagataactcaagtaaagattcccatgtttatccatgatatataatttgcaaaa 12
Query: 720 atagttgatca 730
|||||||||||
Sbjct: 11 atagttgatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1138
Length adjustment: 10
Effective length of query: 728
Effective length of database: 1128
Effective search space: 821184
Effective search space used: 821184
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_m12.g1 MSMg01no313_m12.g1 CHROMAT_FILE:
MSMg01no313_m12.g1 PHD_FILE: MSMg01no313_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:53 2005
(708 letters)
>mm_chr5_12244563_12245670
Length = 1108
Score = 1253 bits (648), Expect = 0.0
Identities = 693/708 (97%)
Strand = Plus / Plus
Query: 1 ctaaattcctctttgttacaagagcatagagcagcatttggctttggcctttagttggtg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ctaaattcctctttgttacaagagcatagagcagcatttggctttgccctttagttggtg 260
Query: 61 gcatgtttttacttagctctgttaaagagattactaaagctctatgtcaaagaacatgaa 120
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gcatggttttacttagctctgttaaagagatcactaaagctctatgtcaaagaacatgaa 320
Query: 121 catagtcttaggagagtactatgctacccatttacagtcatagctggaaggtttctcttc 180
|||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 catagtattaggaaagtactatgctacccatttaccctcatagctggaaggtttctcttc 380
Query: 181 aataggacttttatgttcagtccagagaatcaaatgctttagtaccaaaagatttctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataggacttttatgttcagtccagagaatcaaatgctttagtaccaaaagatttctgtg 440
Query: 241 acgtggtttgcagtgtgcactgaattgaaaagtaatcacagagtataactgtgctctaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 acgtggtttgcagtgtgcactgaattgaaaagtaatcacagagtataactgtgatctaga 500
Query: 301 agaatgctgctaaatgtgatgtaactaatgataactaattctcccacaatgctgagcccc 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 agaatgctgctaaatgtgatgtaactaatgataactaagtctcccacaatgctgagcccc 560
Query: 361 aaagtacgcaaacacatgaccaattgtgtgttgtatagagggattttgattacataggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagtacgcaaacacatgaccaattgtgtgttgtatagagggattttgattacataggga 620
Query: 421 atctgagatattttctttgcagaaatgtgattagatagtgattagatatttgttaaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctgagatattttctttgcagaaatgtgattagatagtgattagatatttgttaaaaat 680
Query: 481 ctcactctttaaataaactcataatggcatactgccatgtattctcagaggtgctatgta 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcactctttaaataaactcataacggcatactgccatgtattctcagaggtgctatgta 740
Query: 541 ggaaactgtgaatgagatgggagaaacaaggaaagtaaacaacaaaaattacagcaacta 600
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 741 ggaaactgtgaatgagatgggagaaacaagcaaaataaacaacaaaaattacagcaacta 800
Query: 601 tcaatgcccatcaccctaactatgcagattatctcatttcagtcctaactctccccgggt 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 801 tcaatgcccatcaccctaactatgcagattatctcatttcagtcctaactctcctggggc 860
Query: 661 tggctatttaagaatcaatggaaaagtgaagcttgatataaaacaatg 708
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tggctatttaagaatcaatggaaaagtgaagcttgatataaaacaatg 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
