BAC Information

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BAC

Clone NameMSMg01-313O01
Chromosome5 (Build37)
Map Location 80,561,185 - 80,561,505
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313O01.T7 (MSMg01no313_o01.b1)MSMg01-313O01.TJ (MSMg01no313_o01.g1)
ACCAG435678AG435679
length1,1891,207
length of high quality
(start - end)
362 (36 - 397)378 (75 - 452)
definitionCHROMAT_FILE: MSMg01no313_o01.b1 PHD_FILE: MSMg01no313_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:05 2005CHROMAT_FILE: MSMg01no313_o01.g1 PHD_FILE: MSMg01no313_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGACACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CCTGTCTTGATTTTCATAAATGATAAAATGCATATTGTCAAAAGAAATCG
AACCTTTCCTACCCAAGTAGAGTTTACCAACAATGTTTATTCACAGAAAT
ACAAACCTAAACAGACAGCATACACCAGCTGATATGAGGCCCCCAACACA
CATACAGCAGAGAACTGCCAGGTTTGTGTTCAACCAGAGACGATGCACCT
AACCCTCAAGAGACTGGAGGCCCTAGGGAGTTTAGCGGTCAGGCGGGGTG
GGGGAATGGAATATTCTAGTGAAGACAAGGGAGTGGGGAGGAGGAATTGT
ATTTGGAATCCTCAGGTTAGGNNCAGGGGTGGAATAAATCTGGTGTGTTT
TTTTAACAAACAAACAAACAAACAAATGCCCCTAACTAAGAAAATATTGT
TTTTTTTTTTCCCCCCCCCCCCNNAGNNNGNCCCCTCCCTAAAAAAAGAA
GGGGGNNNNNNNNNNNCNNTNCNTTTCTTGTTCTCTGCCTCCCTCCCCTT
CCTTTCTTGCCCCGTCTTCTTCTCTTTGCCTTCTCTCTGTCCTTGCCTGT
GCTTCCCTCTCTCTTCTGCTTTTCCCGGCCTTGTTTTTCTTCTTGTCCTT
GTCCTCCTCTTGCGCTTCCTTCCCCCTGCCTTCTGTCTCTTCTTTTCTTT
TCTCTTTTTCTTCTTCCTCCTTTGTTTCTTCTTTTTTTCTCCCTTCCGTC
TCCCTCTCCTTCCTTCTTTCCTTCCCTCCCTCCTCTCCTTTTCCCTCTTC
TTTTCTCTCCTCTCTCTCTTCTCCTCCTCTTTTTTCTTCTTTCCCCCTTC
CTTTCTTTTTTCTCCTCCTCCCTCCTTCTTCCCTCTCTCTTCCTCCCCTT
CCCCCCTCTCCTCTTCTCTTCTCCTTCTCTTTCCCTTTTTCCTCCTCTTC
CCTTCTCCTCCTTTTTCCTCCCCTTTTCCTCTCCTTTTCTTTCCCTCTCT
TTCTTCTTTTCTTTTTCCCTTCCTCCTTTTTTTTCCCTTCCGTCTCTCTT
CTCCTCTCTCCTTTTTTTCCCTCCCTCTCTCTTTTCCTCTTTCTTCTCCT
TCCCTCCTCCTCTTCCCCCCTTTTCTTTCTTGCTCTCTCTTCTTCTTTCC
TTCTCCTCTTCTTTTTTTTTTCTCTCTCTTCCCTTCCTC
NNNTTCACTGATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAACAATATTAGAATTTAAAAGGA
AATGAAGATATTTGATTAAAAGAATGTAAAGGGATAAAATTGTATGATTT
AATTCACTCATGAATTAATTTATTATACAATCTTTCACTTTCTTAGTTAT
AATTTCCAAAAATATTTTTTGAGGCTATGGAGAAAAATTTTTTTTTCTGT
CTGCCATTTGTATATAGAAAGACTACTGATTTTGTGTGTTAATTATGTCT
CCTGTTACCTTAATGAATGTGTTTATCAGGTATGGTTTCCTGGTGGAAGT
TTTGGGGTTATTAATGTTTACCATCATATGACCCACAAATAAAGATATTC
TGAAATCTTCCCTTTGTGTTTGTATCCCTTTCAGTGTCTACTTCAGTTTT
ATTATTTTTTACCCCCCCCATTCAACAGCTACAGGTAAAAAAAAAAAGGG
GGACTTCTTCCTGGTTTTAGTGCAAATGAGTTAAGTTTCTATCAACTTAG
GTTGATATTGGATGTGTTCTTATTGTTAATTGGCTGCATTGTTTTGAGGC
ATGCACCTTGTATCCCTAGTCTCCCCAAAAGGTATGATGAAAGGGTGTGG
ATTTTGTCAAAGTCCTTTTCTTTTTTTTCTTTTTAAAGATTTATTTATTT
ATTTTACGTATATTATGAGTACACTGAAGTTGTCTTCAAACACACCAAAA
GAGGGCATCAGATCACATTGCAGATGGTTGTGAGCCACCATATGGTTGCT
GGGAATTGATCTCAGGATCTTTGGGAGAGCAGTCAGTGCTCTTAACCACT
GAGCCATCTCTCCAGCTCTTTTCTTAATCTAATGAAATATTTTTGTAACT
TTTGCCTGTCCATTTATATGGGTGGTGACATTTATGGTTTTATATATGTT
GACCCACCTTTTCATCTCTGGAATGAAGGATAATTGACCATGGCTCGTGA
ATCCTTGTAATGGGTTCTTTGATTTACTTTGCCAAAAATTTTATTGAAAA
ATTTTGCAACTAAACTAATAAATGAAAACCGTTTTTGAATTTCTTTCTTT
TCGTGAAATAATCCAAATTTTTGTCTTTATTTTTGGGGTCAATCTTCCTT
TTCTAAATCACATATATATCTTCTTGCTCATGTTTCCTTTTGTTATCGCT
GTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_o01.b1 MSMg01no313_o01.b1 CHROMAT_FILE:
MSMg01no313_o01.b1 PHD_FILE: MSMg01no313_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:05 2005
         (362 letters)



>mm_chr5_80561185_80561946
          Length = 762

 Score =  598 bits (309), Expect = e-175
 Identities = 318/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattcctgtcttgattttcataaatgataaaatgcatattgtcaaaagaaatcgaacct 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattcctgtcttgattttcataaatgataaaatgcatattgtcaaaagaaatcgaacct 262

                                                                       
Query: 71  ttcctacccaagtagagtttaccaacaatgtttattcacagaaatacaaacctaaacaga 130
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctacccaagtagagtttagtaacaatgtttattcacagaaatacaaacctaaacaga 202

                                                                       
Query: 131 cagcatacaccagctgatatgaggcccccaacacacatacagcagagaactgccaggttt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcatacaccagctgatatgaggcccccaacacacatacagcagagaactgccaggttt 142

                                                                       
Query: 191 gtgttcaaccagagacgatgcacctaaccctcaagagactggaggccctagggagtttag 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtgttcaaccagagacgatgcacctaaccctcaagagactggaggccctagggagtttag 82

                                                                       
Query: 251 cggtcaggcggggtgggggaatggaatattctagtgaagacaagggagtggggaggagga 310
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  cggtcaggtggggtgggggaatggaatattctagtgaagacaagggagtggggaggagga 22

                                
Query: 311 attgtatttggaatcctcagg 331
           |||||||||||||||||||||
Sbjct: 21  attgtatttggaatcctcagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)