BAC Information

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BAC

Clone NameMSMg01-315M02
Chromosome5 (Build37)
Map Location 15,195,605 - 15,196,254
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315M02.T7 (MSMg01no315_m02.b1)MSMg01-315M02.TJ (MSMg01no315_m02.g1)
ACCAG436307AG436308
length740743
length of high quality
(start - end)
696 (45 - 740)636 (76 - 711)
definitionCHROMAT_FILE: MSMg01no315_m02.b1 PHD_FILE: MSMg01no315_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:20 2005CHROMAT_FILE: MSMg01no315_m02.g1 PHD_FILE: MSMg01no315_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAATGATGCCAGGCTGTTGATCCAGGTGGGACCCAGGTCCACTCT
GAAAAACAATGGCTTTAACTTCAAAGATAAGAGTAAACCAAAAGTCCCTT
CTAGTGACCATTTTACATTAAAAGTCGGCTACTCGGAGGCGCAGAAAGTC
TGCCAAGGTCCCTTCTTAATTTCTACTGAAAGAGTATGGGCCCTTGATCT
AACTTCAGTCCGGTGGTCTAAAGTCAAACTTAGGGGGGTCGTTACAGTCC
GTCCAGTACCACGGAAAACACAAAACAAACACAGAAAACACACATACACA
CACTGACAAATACCTGAAAACAGACACAAAAAACAAATACACACTGACAG
ATGCCTGTTTTCCATCACACACACAAAACCAACTCAGAAATGCAGACGGT
CGAGGGAGTACACTCCCCGCCTCAGACGGACTCCTAGAGTCCTTCCCCTA
GCTCAGGGCTTCAGAAATACAGATGGTCGAGGGAGTACACTCCCCGCCTC
AGAGGGACTCCTAGAGTCCTTCCCCTCGCTCAGGGCTTCAGAAATACAGA
TGGTCGAGGGAGTACACTCGCCACCTCAGATGGACTCCTAGAGTCCATCC
CCTCACTCAGGGCGTCCCCCAGAGAGAGCAGCAGCTGGTGATTCCAGTAC
TTCTGCTGTTCACACTCAGTGCCTCATCCCGAGGCAAAGG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGCTCATCACAAGCCGTCACT
AACAGAATGTGGGTGGTGAGAACTAGTGCTTATTTGTTGATGAAGAAGTA
AGAACATACATACATCAGGGACCACATTTTGAATGTGTTTTGTGGTACAG
CCTAGGTTTTGGGTGTTTATGAACAGTATACTTGAGGAAACCTTGGAATT
GAGAGCTTTATATGCTCTACATTAAAATATAACTTTTACATTTGCTACAT
TTACATGACGATGAATAAACCCCAATGATTGCTTACTGCTTTATAACACT
GTTGTTAGTGTTAACCCACGTGACTGTCAGGATGTACACAGAGATGGTCG
TAACTTAGCAACTTATCTTCAGCTATTTTATAGACTGTTAAGACAACAGC
CATGATAGTATTATATTAGGACTGTCATGCTTTTATATGTTAAAAAAATG
CTTGTATGTATAAAATATAAAATTGCAAAAGAGCAGTAACTCATTGAGAT
TGTTATAGATTAAACTTTATTCATTTAAAAAGTAAACTTTAATTTTGTTA
AGGAATTTAAACAACAAGAACCCAATAAAAACCTTTTTATACAAAACTTG
TAATTTAAAGCATGTTATTTTGTAAATTTTACTAAGCTCAGATCAATATA
TTAAGAAATATTAGTTAATCTAGATGGGAAAGCCCTATCGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_m02.g1 MSMg01no315_m02.g1 CHROMAT_FILE:
MSMg01no315_m02.g1 PHD_FILE: MSMg01no315_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:20 2005
         (636 letters)



>mm_chr5_15195499_15196534
          Length = 1036

 Score = 1127 bits (583), Expect = 0.0
 Identities = 628/651 (96%), Gaps = 16/651 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 697

                                                                       
Query: 61  gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 637

                                                                       
Query: 121 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 636 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 577

                                                                       
Query: 181 ctttatatgctctacattaaaatataacttttacatttgctacatttacatgacgatgaa 240
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 576 ctttatatgctctacattaaaatataacttttatatttgttacatttacatgacgatgaa 517

                                                                       
Query: 241 taaaccccaatgattgcttactgctttataacactgttgttagtgttaacccacgtgact 300
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 516 taaaccccaatgattgcttactgcgttataatactgttgttagtgttaacccacgtgact 457

                                                                       
Query: 301 gtcaggatgtacacagagatggtcgtaacttagcaacttatcttcagcta-ttttataga 359
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 456 gtcaggatgtacacagagatggtcgtaacttagcaacttatcttcagctatttttataga 397

                                                                       
Query: 360 ctgttaagacaacagccatgatagtattatattaggactgtcatgcttttatatgttaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 396 ctgttaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgtt-aa 338

                                                                       
Query: 420 aaaatgcttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagattgtt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaaatgcttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagattgtt 278

                                                                       
Query: 480 atagattaaactttattcatttaaaaagtaaactttaattttgttaaggaatttaaacaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atagattaaactttattcatttaaaaagtaaactttaattttgttaaggaatttaaacaa 218

                                                                       
Query: 540 caagaacccaataaaa-----------ac---ctttttatacaaaacttgtaatttaaag 585
           ||||||||||||||||           ||   ||||||||||||||||||||||||||||
Sbjct: 217 caagaacccaataaaaagaaataatatactatctttttatacaaaacttgtaatttaaag 158

                                                              
Query: 586 catgttattttgtaaattttactaagctcagatcaatatattaagaaatat 636
           ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 157 catgttattttgtaaattttactaagctcagatcaatattttaagaaatat 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)