BAC Information

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BAC

Clone NameMSMg01-316C11
Chromosome5 (Build37)
Map Location 84,267,328 - 84,267,662
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneLOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316C11.T7 (MSMg01no316_c11.b1)MSMg01-316C11.TJ (MSMg01no316_c11.g1)
ACCAG436585AG436586
length726734
length of high quality
(start - end)		655 (42 - 696)622 (77 - 698)
definitionCHROMAT_FILE: MSMg01no316_c11.b1 PHD_FILE: MSMg01no316_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:50 2005CHROMAT_FILE: MSMg01no316_c11.g1 PHD_FILE: MSMg01no316_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGTGTCTTGCGACTCAAGTATGAGAGTTTTCCCATCAAGTTCTAGAG
GGTAACCCCAAGCAGTGGCAACTTCTGCTAATGTTTGGGGTGGAGTTCTA
TAGGATTCTACAGACCAACATTTTGAAAATAAATAACCTATCTTATCAGG
GAAAAGCATGGTTCAGAGTAATAACATTTGTAGTTATTTTCTATATGCAT
ATAGTTTAAAACCTTCTATAATAATAATGTTCCATATGACTTTTCAAAGG
CCTTTACTGCCTATTATTCTTGCCAATATTTCTTCTTATACCCTGCCCCC
CTATCTCTCTCCCCACTTAAACCTTTTTTTTGAATCATTGTTGTTTATTT
TTTCCATTTTTTTATTAGGTATTTAGCTCATTTACATTTCGAATGCTATA
CCAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACCCACCCACTCC
CCTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGT
GTCCAATGGGCCTCTCTTTCCAGTGATGGCCGCCTAGGCCATCTTTTGAT
ACATATGTAGCTAGAGTCAAGAGCTCCGGGGTACTGTTTTTTTTTTTTTT
TTTTTTTTTTTTTAAGGTTTATTTATTTATTATATCTAAGTACACTGTAG
CTGTCTTCAGACACTCCAGAAGAGGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACAATATGTACTCACTGATAAG
TGGATATCAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTG
CTAAACGCATGAAACTCAAGAAGAACGAAGACCAAATTGTGGACACTTTG
CCCCTTCTTAGAACTGGGAACAAAACACCCATGGAAGGAGTTACAGAGAC
AAAGTTTGGAGCTGTGACAAAAGCATGGACCATCTAGAGACTGTCATATC
CAGGGATCCATCCCATAATCAGCTTCCAAATGCTGACACCATAGCATACA
CTAGCAAGATTTTGCTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGAC
TATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTG
GATGGATCACAGGGCCCCTAATGGAGGAGCTCGAGAAAGTAACCAAGGAG
CTATACGGATCTGCAATCCTATAGGTGGAACAACAATATGAACTAACCAG
TACTCCCTCTTGAGCTCCTGTGTCTAGCTGCATATGAATCAGAAAATGAC
CTAGTAGGCCATTAGTGGAAAGAGAGGTGCATTAGTCATGCAAACTTTAT
ATGCCTCAGTACAGGGGAACAACAGGGCCAAGAAGTGGGAGCGGGTGGTG
TGGGNGGAAGTGTTTTTCCTCTCTTCTCCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_c11.b1 MSMg01no316_c11.b1 CHROMAT_FILE:
MSMg01no316_c11.b1 PHD_FILE: MSMg01no316_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:50 2005
         (655 letters)



>mm_chr5_84267322_84268376
          Length = 1055

 Score =  632 bits (327), Expect = 0.0
 Identities = 333/335 (99%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtgtcttgcgactcaagtatgagagttttcccatcaagttctagagggtaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 341 gaattctctgtgtcttgcgactcaagtatgagagttttcccatcaagttctagaggctaa 282

                                                                       
Query: 65  ccccaagcagtggcaacttctgctaatgtttggggtggagttctataggattctacagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ccccaagcagtggcaacttctgctaatgtttggggtggagttctataggattctacagac 222

                                                                       
Query: 125 caacattttgaaaataaataacctatcttatcagggaaaagcatggttcagagtaataac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 caacattttgaaaataaataacctatcttatcagggaaaagcatggttcagagtaataac 162

                                                                       
Query: 185 atttgtagttattttctatatgcatatagttt-aaaaccttctataataataatgttcca 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 161 atttgtagttattttctatatgcatatagttttaaaaccttctataataataatgttcca 102

                                                                       
Query: 244 tatgacttttcaaaggcctttactgcctattattcttgccaatatttcttcttataccct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tatgacttttcaaaggcctttactgcctattattcttgccaatatttcttcttataccct 42

                                              
Query: 304 gcccccctatctctctccccacttaaacctttttt 338
           |||||||||||||||||||||||||||||||||||
Sbjct: 41  gcccccctatctctctccccacttaaacctttttt 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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