BAC Information

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BAC

Clone NameMSMg01-316C21
Chromosome5 (Build37)
Map Location 60,953,230 - 60,953,552
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1
Downstream geneLOC100041498, LOC666597, EG666610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316C21.T7 (MSMg01no316_c21.b1)MSMg01-316C21.TJ (MSMg01no316_c21.g1)
ACCAG436604AG436605
length754764
length of high quality
(start - end)		373 (40 - 412)352 (75 - 426)
definitionCHROMAT_FILE: MSMg01no316_c21.b1 PHD_FILE: MSMg01no316_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:52 2005CHROMAT_FILE: MSMg01no316_c21.g1 PHD_FILE: MSMg01no316_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TACCTGAGTGACACTGAATGGCAGAGAAACACCTGAAATAAATGTTCAAC
ATACTTAATCAGGGAAATGCAAATTAAAACAACCTTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATGAAAAATTCAGATGACAGCAGATGCTGG
TGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGCCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCAGAGGATCCCACAATACCTCTCCTGGGCATATATCCA
GAAGATGTTCCAAGGGGTAAGAAGGACATATGCTCCACTTCATTCATAGT
AGCCTTATTAACACCACCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTAC
TCAGCTCTTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTTAC
ACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTGGAATAC
CCAAGATATAAGATACAATTTGCTAAACACATGANACTCAAGAAGAATGA
AGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAAATGGGAACAATACAC
CCAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTACCACTGCTCTATTAGGATGGAA
ATTATAAACACAATGAATGAAAAACTCTTCTCAGCTCATTAGTGTTAAAT
ATTGAAAAATCATCATTGAAATACTGTAGAATTTGCCTCAACTTTCAAAG
AAATTATAAAGGAAACATGAGTTTAATTAACAAGAGTTGGTTAAAATTAT
GAGCAGGTACTCTTATAGTTCATTAAAATGAAGTTATGAATTTATCTTTG
CATGTTAATAGAAATGGTGCTAAATATCTTATCATTTACATATAAACTAT
ATAGGAGTATGCAGTGTGTTGTGTGTGTGTACGTGTGTGTGTGTGTGTGT
GTGTGTGTGTNNTTTCCCCCCCCCCCNTTTTCTTCTCCTCTCCTTCTTCC
CTCCTTTTTTTTTCTTCCCTTTTCCCTTCTTTCCTCCCTTTCCTTTTTCC
CCTTCTTTCCCCTTCTTTCCTCCTTCTTTTCTTTCCTCTTTTTTCTTTCT
TCTTCCCCCCCCCCTTTCTCCCCCTCTTCTTCTCTTCTTCCTTCTTCTTC
TTCCCCTTTTTCCCCCCTTTTCCCCCCTTTTTTTTCCCCTTTTTTTTTTC
CCCCCCCTTTCTCTCTTCCTTTTTCTTTCTTCTTTTCTCTTTCCCCTCTT
TCTTTTTCCTTCTCCCTTTTTCTCCTCTTTTTTCCCCCTTTTTTTCTCCC
TCTCTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_c21.g1 MSMg01no316_c21.g1 CHROMAT_FILE:
MSMg01no316_c21.g1 PHD_FILE: MSMg01no316_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:52 2005
         (352 letters)



>mm_chr5_60953030_60953781
          Length = 752

 Score =  586 bits (303), Expect = e-172
 Identities = 319/325 (98%), Gaps = 2/325 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaccactgctctattaggatggaaattataaacacaatgaatgaaaaactcttctcag 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaccactgctctattagaatggaaattataaacacaatgaatgaaaaactcttctcag 260

                                                                       
Query: 61  ctcattagtgttaaatattgaaaaatcatcattgaaatactgtagaatttgcctcaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcattagtgttaaatattgaaaaatcatcattgaaatactgtagaatttgcctcaactt 320

                                                                       
Query: 121 tcaaagaaattataaaggaaacatgagtttaattaacaagagttggttaaaattatgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tcaaagaaattataaaggaaacatgagtttaattaacaagagttggttaaaattacgagc 380

                                                                       
Query: 181 aggtactcttatagttcattaaaatgaagttatgaatttatctttgcatgttaatagaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aggtactcttatagttcattaaaatgaagttatgaatttatctttgcatgttaatagaga 440

                                                                       
Query: 241 tggtgctaaatatcttatcatttacatataaactatataggagtatgcagtgtgttgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtgctaaatatcttatcatttacatataaactatataggagtatgcagtgtgttgtgt 500

                                    
Query: 301 gtgtgtacgtgtgtgtgtgtgtgtg 325
           ||||||  |||||||||||| ||||
Sbjct: 501 gtgtgt--gtgtgtgtgtgtctgtg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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