BAC Information

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BAC

Clone NameMSMg01-317P14
Chromosome5 (Build37)
Map Location 41,246,814 - 41,247,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317P14.T7 (MSMg01no317_p14.b1)MSMg01-317P14.TJ (MSMg01no317_p14.g1)
ACCAG437895AG437896
length741742
length of high quality
(start - end)		374 (47 - 420)348 (76 - 423)
definitionCHROMAT_FILE: MSMg01no317_p14.b1 PHD_FILE: MSMg01no317_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:03 2005CHROMAT_FILE: MSMg01no317_p14.g1 PHD_FILE: MSMg01no317_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATTTCTTACATGGGCCTTGCTAGGCAGTAGTGGTGCATGCCTT
TAATCCCAGCACTTGGGAGGCAGAGATAGGTGGATTTCTGAGTTTGAAGC
CAGCCTGGTCTACAGAGTAAGTTCTAAGACAGCCAGGGCTATACAGAGAA
TGTCTTGAACCCCACCTCCCCCCCCCAAAAAGGAGTGGGCCTTAAGTCAA
ATCAGACATTGGTTGGTTACTCCCACATGCTTCTAGTTACTACTGTCCCA
GTATATTTTGCAGACAAGACATGCTTATGTTTCCTTTTTGTACTTCCAGA
GTAACTTTCTCTACCAAAGACACTACAACAAAGGGGTGGATGTAGGTCTG
TGTCCAAAATTTTAACTACAAACAACATAGGAGACAGTTGCTCCAATAAC
ACCTCTCATTTATTGAAAGAAAATGAAGAATTGTGGGGCAAGTAGAACTG
TGTCACCAGAATAAAGAACCCAGGCTGTTCTCTTAATTGAGGACAAAAGG
CATTTGAATCTGACCCCAACCAGATTCCTGTCCTGTTATATGTGATCCTG
ACACCCCACTATGAGGACCATGACAACTGGTCACATAGCAAAGAGCCCAG
AGTTTTCCATGTTAATAAGGTCTCTAGATTGGCTGGCTTCAGGATTTAGC
CAATAAGCTTCTCTTCCCAGACATCCCTTCCTAAAAATGGT

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAACATAACTGCTTAATTAT
GCGTGATGAGGTGACTGTAAAACACAGAAGATATTTTAAAACTTTAATTA
AATTCAGTGCACATATTGTTTGAAAAATCTTCATAGCCTGATCCATTAAC
AACTACAAAGAAAAACTTAGACAAAAGCCACAATGATTCTCAGAAAAATA
ATCTGGAAAAGAAAGTAATCAAAATTCCAACAGGAAAATGGACCCCAAGA
AAAACTCTAATTTAAGATAAAAAAATACATATACCGGCCATCTGTATATC
ATTTTCTATTACTTTTTTTTTCACGATTCTAATTTCCTTTCTATTGCTGT
GATAAACTATACAACCAAAACCAACTCGAGGAGAAAGGTTTATTTCATTT
TACACTCATCCATCAAAGGAAACCAGGACAGGAACTCTAGATGGGAGAAT
GAAGTAGAAACCATGAAGGGATGTTGCTCTGTGGCTCTGTCTCCAGCTGT
GGATGCTCAGCAAGCATTTATATACAGCCCAGGCCCACCAGCCTAAGGAT
GGTAACACCCACTGTGATGCTGTGCTCTTCTATATAAACCAGCAATCAAA
ACAGCACACCACAGACATGCCCACTGACCAATCTTCTGGGGGCAACTCTT
CAACTAAAATTCTATTTGCCCAAGTATGTCATTGACACCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_p14.g1 MSMg01no317_p14.g1 CHROMAT_FILE:
MSMg01no317_p14.g1 PHD_FILE: MSMg01no317_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:03 2005
         (348 letters)



>mm_chr5_41246614_41247363
          Length = 750

 Score =  652 bits (337), Expect = 0.0
 Identities = 344/347 (99%), Gaps = 2/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaaaacataactgcttaattatgcgtgatgaggtgactgtaaaacacagaagatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 attaaaaacataactgcttaattatgcgtgatgaggtgactgtaaaacacagaagatatt 488

                                                                       
Query: 61  ttaaaactttaattaaattcagtgcacatattgtttgaaaaatcttcatagcctgatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttaaaactttaattaaattcagtgcacatattgtttgaaaaatcttcatagcctgatcca 428

                                                                       
Query: 121 ttaacaactacaaagaaaaacttagacaaaagccacaatgattctcagaaaaataatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttaacaactacaaagaaaaacttagacaaaagccacaatgattctcagaaaaataatctg 368

                                                                       
Query: 181 gaaaagaaagtaatcaaaattccaacaggaaaatggaccccaagaaaaactctaatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaaaagaaagtaatcaaaattccaacaggaaaatggaccccaagaaaaactctaatttaa 308

                                                                       
Query: 241 gataaaaaaatacatataccggccatctgtatatcattttctattac--tttttttttca 298
            ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 307 aataaaaaaatacatataccggccatctgtatatcattttctattactttttttttttca 248

                                                          
Query: 299 cgattctaatttcctttctattgctgtgataaactatacaaccaaaa 345
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cgattctaatttcctttctattgctgtgataaactatacaaccaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 750
Length adjustment: 9
Effective length of query: 339
Effective length of database: 741
Effective search space:   251199
Effective search space used:   251199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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