Query= MSMg01no318_f23.b1 MSMg01no318_f23.b1 CHROMAT_FILE:
MSMg01no318_f23.b1 PHD_FILE: MSMg01no318_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:32 2005
(542 letters)
>mm_chr5_25038278_25039219
Length = 942
Score = 934 bits (483), Expect = 0.0
Identities = 520/533 (97%), Gaps = 2/533 (0%)
Strand = Plus / Plus
Query: 1 ctcaagttttagagactcctctggcctcagacttctgtattgctgatatccaggcctatg 60
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 201 ctcaagttttagagactcctctggcctcagacttctgtattgctgagataaaggcctatg 260
Query: 61 ccactaggcacagcttatttttcttaaatgttttaatgcagtgtgtcattttaaaactgg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ccactaggcacagcttatttttcttaaacgttttaatgcagtgtgtcattttaaaactgg 320
Query: 121 ccaatcacgtaagaaaaactagttggtgtgagcaaggaagagctgcctcccacccccttg 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaatcacgtaagaaaaactacttggtgtgagcaaggaagagctgcctcccacccccttg 380
Query: 181 ccagctgctgcaggagggagggcagccctcttgcctaggcagcacctccctagagagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ccagctgctgcaggagggagggcagccctcttgcctaggcagcacctcccttgagagctg 440
Query: 241 gtagagctggcgctggtggtgtgctggggagtcaggcctgagagatagcgttctggaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagagctggcgctggtggtgtgctggggagtcaggcctgagagatagcgttctggaaag 500
Query: 301 ctagcgctgtcccttgcagccggctgcaggctagggagctgcccttccccccctcccttt 360
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ctagccctgtcccttgaagccggctgcaggcaagggagctgcccttccccccctcccttt 560
Query: 361 tttttttttttttc--ccccctgggcaaagcaggagaattggcaagctgaccaactcaac 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttttttttttttttccccctgggcaaagcaggagaattggcaagctgaccaactcaac 620
Query: 419 taacacccacccagatccaggggctttgggtggcgcacgcctttaataccagcactcggg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacacccacccagatccaggggctttgggtggcgcacgcctttaataccagcactcggg 680
Query: 479 aggcagaggcaggcagatttctgagttccaggccagcctggtctacagagtaa 531
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcagaggcaggcggatttctgagttccaggccagcctggtctacagagtaa 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no318_f23.g1 MSMg01no318_f23.g1 CHROMAT_FILE:
MSMg01no318_f23.g1 PHD_FILE: MSMg01no318_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:32 2005
(344 letters)
>mm_chr5_25196906_25197649
Length = 744
Score = 658 bits (340), Expect = 0.0
Identities = 343/344 (99%)
Strand = Plus / Minus
Query: 1 caggatagccagagctacataatgaggtcctgcttcaaagagctactcaggaaacatata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 585 caggatagccagagctacataatgaggtcctgcttcaaagagctactcaggaaacagata 526
Query: 61 gctaggtaaatagatgagactagaatgttcgagtcttcctccttcctctcgcccattttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gctaggtaaatagatgagactagaatgttcgagtcttcctccttcctctcgcccattttt 466
Query: 121 cttctttctacctgctccccttgtcccaaggatgtcctatagttcaggcaagtcttcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cttctttctacctgctccccttgtcccaaggatgtcctatagttcaggcaagtcttcatc 406
Query: 181 acatttctgcctctgaggtagccaggtaaacaatgttgctccttggagctgagaattctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acatttctgcctctgaggtagccaggtaaacaatgttgctccttggagctgagaattctg 346
Query: 241 ataagttgcacttgaagatgaatgtctatgatttggggttctgtgtaatttttcacacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ataagttgcacttgaagatgaatgtctatgatttggggttctgtgtaatttttcacacac 286
Query: 301 agggaaatgatgtactcactttcgaattcggaagttcattttgg 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agggaaatgatgtactcactttcgaattcggaagttcattttgg 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
