BAC Information

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BAC

Clone NameMSMg01-318J10
Chromosome5 (Build37)
Map Location 92,851,710 - 92,852,058
singlet/doubletsinglet
Overlap geneNup54
Upstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3
Downstream geneScarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318J10.T7 (MSMg01no318_j10.b1)MSMg01-318J10.TJ (MSMg01no318_j10.g1)
ACCAG438348AG438349
length754753
length of high quality
(start - end)		349 (76 - 424)253 (77 - 329)
definitionCHROMAT_FILE: MSMg01no318_j10.b1 PHD_FILE: MSMg01no318_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:48 2005CHROMAT_FILE: MSMg01no318_j10.g1 PHD_FILE: MSMg01no318_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTGACTACGCG
GAATTCCTAAACCCTTTTCAATGAGATCTATAGCTACCACATTATTTTAT
TCAGCCCCCTATTGATGAAGGAGGAAATACAGTTCTGTCAAAAACTTGCA
TTATAAATGCAAATGTAGCAGGTGACTAGAATTCAGATCTCCCCATCCCT
ACTTAGTTTCGCCTCCCAGCATGCTGCCTTACCATGGTAGAACTGTTTTT
AAAAAGCCGAGAAAATGACTCTCTCCGAATGCAAGAATACAACCGACAGC
CCACACGTGTGCCTCCTTTCTGGTAATTATTAGTTTGTACATAAAATAAA
ATGGTGCTACACTTACTTTTCAGAGTCTGGGTTATCCACCTTGGCCTGTT
CCCAAATAATAGGATCAACACCCACCACCCAACACAAATATTCTTTAGAA
CACATAATTTTCTGTGTTTATATTGCTATGAGAAATGCTTTCTTAAAATT
TGACACTGAGTTCAGAAGCTGTATAAGGAATTACTTTTATAAAGTCATTG
CAAGAATTTTATAAGTTCTGATAGAAAGGAAGTATCTGCAACAGACAGTG
GAATTAATACCTTTGGGACCCGCACACACATAGCCACAACAAATTACGCA
GGAAAGGAGCACAGGACAGAATAAGGCTATTCCCAAACAAGAGTGAGAAG
ATTTCTACCTGTTCACCAGGAAAATTCAGACTAAATATTAACTCCTTCAC
TACT

NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGATTCCCAAAAAGAAGATAGGT
AGGTGGATAGTCAGAAAGATATAGATGAAAGAAAATTAGAATGATGTTTC
CTTGAATTCTAGCAAACCATGAAACCCAAGGAAATGGTTGTTGGATCCTG
GAAGTTCATCAGCCAATAGAAGCAGAAAACTCATGAACTTGGGATTGATT
GTTGAAATGGGGAGAATCTTAAACTGAGTCCTTTAACGTATGAGATCAAA
ACTGACTCGGGGTAGAGTGTCAGAACTGTGTTTTAAGGGAGGACATCGAG
TTGATATCCTGTGAATTTAAGAATTGCTTAGTGTGCAAAACCTCTCCCTA
CTTACCAGCTCTCTCCCTGGAGACACCCCCCCAACACCGGGACAGAGTAA
ACCTCCCTTTCCACCGCCCTCTGTGTTATTGGTCTCAGTGTCTGTACCCT
GTTCGAACCTCATCTGAGTACCTCCGTCTATTTAGGCTCCACTGCATTCT
GTAACTCTTCTTGGCTTAACCCTGCTCAAAGTCTTCCCTAAAGCTTGGCA
GTGCTCCCCGCGGCTCATAATTCCACTCAGAGCCTCCCCAGACCCCAGGG
CCCAGAGGCTCTGGCTATACCATATCCTGCTGGTGCCTAATCCGTGTTCA
CATTTCAACACTTAATCTTTTAAAAGTATGTGAATTTGGAAGCATGTATT
TAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_j10.b1 MSMg01no318_j10.b1 CHROMAT_FILE:
MSMg01no318_j10.b1 PHD_FILE: MSMg01no318_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:48 2005
         (349 letters)



>mm_chr5_92851510_92852260
          Length = 751

 Score =  621 bits (321), Expect = 0.0
 Identities = 342/349 (97%), Gaps = 2/349 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctatagctaccacattattttattcagccccctattgatgaaggaggaaatacagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctatagctaccacattattttattcagccccctattgatgaaggaggaaatacagttc 260

                                                                       
Query: 61  tgtcaaaaacttgcattataaatgcaaatgtagcaggtgactagaattcagatctc-c-c 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 261 tgtcaaaaacttgcattataaatgcaaatgtagcaggtgactagaattcagatctctctc 320

                                                                       
Query: 119 catccctacttagtttcgcctcccagcatgctgccttaccatggtagaactgtttttaaa 178
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catccctacttagtttcacctcccagcatgctgccttaccatggtagaactgtttttaaa 380

                                                                       
Query: 179 aagccgagaaaatgactctctccgaatgcaagaatacaaccgacagcccacacgtgtgcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aagccgagaaaatgactctctccgaatgcaagaatacaaccgacagcccacacgtgtccc 440

                                                                       
Query: 239 tcctttctggtaattattagtttgtacataaaataaaatggtgctacacttacttttcag 298
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctttctggtaagcatcagtttgtacataaaataaaatggtgctacacttacttttcag 500

                                                            
Query: 299 agtctgggttatccaccttggcctgttcccaaataataggatcaacacc 347
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctgggttatccaccttggcctgttcccaaataataggatcaacacc 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 751
Length adjustment: 9
Effective length of query: 340
Effective length of database: 742
Effective search space:   252280
Effective search space used:   252280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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