MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-319P10
Chromosome	5 (Build37)
Map Location	133,891,244 - 133,891,584
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Auts2
Downstream gene	LOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Auts2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319974 MGI:1919847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039731 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 1373 ESTs, 5 Proteins

name	LOC666038 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 30 ESTs

name	LOC100039750 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Gats (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80909 MGI:1933384
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wbscr16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94254 MGI:2137600
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtf2ird2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114674 MGI:2149780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ncf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17969 MGI:97283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtf2i (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14886 MGI:1202722
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 5 mRNAs

name	LOC630424 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:630424
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Gtf2ird1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57080 MGI:1861942
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 10 mRNAs

name	Auts2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486585 GeneID:319974 MGI:1919847
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autism susceptibility candidate 2 transcript_id : NM_177047.3

name	LOC100039731 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254609 GeneID:100039731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 1373 ESTs, 5 Proteins product : similar to ribosomal protein L28 transcript_id : XM_001473924.1

name	LOC666038 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254617 GeneID:666038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 30 ESTs product : similar to Solute carrier family 35, member E3 transcript_id : XM_001475033.1

name	Gats (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:65301482 GeneID:80909 MGI:1933384
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : opposite strand transcription unit to Stag3 transcript_id : NM_030719.3

name	Wbscr16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:15809009 GeneID:94254 MGI:2137600
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Williams-Beuren syndrome chromosome region 16 homolog (human) transcript_id : NM_033572.1

name	Gtf2ird2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16716602 GeneID:114674 MGI:2149780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTF2I repeat domain containing 2 transcript_id : NM_053266.1

name	Ncf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254579 GeneID:17969 MGI:97283
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neutrophil cytosolic factor 1 transcript_id : NM_010876.2

name	Gtf2i (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124001569 GeneID:14886 MGI:1202722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I transcript_id : NM_001080748.1

name	Gtf2i (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124001577 GeneID:14886 MGI:1202722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I transcript_id : NM_001080749.1

name	Gtf2i (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124001571 GeneID:14886 MGI:1202722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I transcript_id : NM_010365.2

name	Gtf2i (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124001575 GeneID:14886 MGI:1202722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I transcript_id : NM_001080747.1

name	Gtf2i (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124001573 GeneID:14886 MGI:1202722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I transcript_id : NM_001080746.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625338 GeneID:57080 MGI:1861942
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081466.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625342 GeneID:57080 MGI:1861942
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081468.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625346 GeneID:57080 MGI:1861942
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081470.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625334 GeneID:57080 MGI:1861942
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081464.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625344 GeneID:57080 MGI:1861942
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081469.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625328 GeneID:57080 MGI:1861942
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_020331.2

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625336 GeneID:57080 MGI:1861942
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081465.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625332 GeneID:57080 MGI:1861942
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081463.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625340 GeneID:57080 MGI:1861942
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081467.1

name	Gtf2ird1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125625330 GeneID:57080 MGI:1861942
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II I repeat domain-containing 1 transcript_id : NM_001081462.1

name	Auts2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486586 GeneID:319974 MGI:1919847
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : unclassified translation discrepancy note : autism susceptibility candidate 2-like product : autism susceptibility candidate 2 protein_id : NP_796021.2

name	LOC100039731 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254610 GeneID:100039731
definition	codon_start : 1 product : similar to ribosomal protein L28 protein_id : XP_001473974.1

name	LOC666038 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254618 GeneID:666038
definition	codon_start : 1 product : similar to Solute carrier family 35, member E3 protein_id : XP_001475083.1

name	Gats (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37674263 CCDS:CCDS19717.1 GeneID:80909 MGI:1933384
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : opposite strand transcription unit to Stag3 protein_id : NP_109644.2

name	Wbscr16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15809010 CCDS:CCDS19718.1 GeneID:94254 MGI:2137600
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005087 - Ran guanyl-nucleotide exchange factor activity [Evidence NAS] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : RCC1-like G exchanging factor-like protein product : Williams-Beuren syndrome chromosome region 16 homolog protein_id : NP_291050.1

name	Gtf2ird2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716603 CCDS:CCDS19719.1 GeneID:114674 MGI:2149780
definition	codon_start : 1 product : gtf2ird2 protein_id : NP_444496.1

name	Ncf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254580 GeneID:17969 MGI:97283
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005829 - cytosol [Evidence TAS] [Evidence ISS] GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0016175 - superoxide-generating NADPH oxidase activity [Evidence IDA] [Evidence ISS] [Evidence IMP] GO_process : GO:0008283 - cell proliferation [Evidence IMP]; GO:0006968 - cellular defense response [Evidence IMP]; GO:0006118 - electron transport [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006691 - leukotriene metabolism [Evidence IMP]; GO:0006742 - NADP catabolism [Evidence ISS]; GO:0009617 - response to bacterium [Evidence IMP] codon_start : 1 exception : mismatches in translation note : NADPH oxidase subunit (47 kD); NADPH oxidase subunit (47kDa) product : neutrophil cytosolic factor 1 protein_id : NP_035006.2

name	Gtf2i (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124001570 GeneID:14886 MGI:1202722
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; Bruton tyrosine kinase-associated protein 135; BTK-associated protein 135 product : general transcription factor II I isoform 4 protein_id : NP_001074217.1

name	Gtf2i (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124001578 GeneID:14886 MGI:1202722
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : isoform 5 is encoded by transcript variant 5; Bruton tyrosine kinase-associated protein 135; BTK-associated protein 135 product : general transcription factor II I isoform 5 protein_id : NP_001074218.1

name	Gtf2i (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124001572 GeneID:14886 MGI:1202722
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; Bruton tyrosine kinase-associated protein 135; BTK-associated protein 135 product : general transcription factor II I isoform 2 protein_id : NP_034495.2

name	Gtf2i (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124001576 GeneID:14886 MGI:1202722
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; Bruton tyrosine kinase-associated protein 135; BTK-associated protein 135 product : general transcription factor II I isoform 3 protein_id : NP_001074216.1

name	Gtf2i (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124001574 GeneID:14886 MGI:1202722
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; Bruton tyrosine kinase-associated protein 135; BTK-associated protein 135 product : general transcription factor II I isoform 1 protein_id : NP_001074215.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625339 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform e is encoded by transcript variant 6; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform e protein_id : NP_001074935.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625343 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform g is encoded by transcript variant 8; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform g protein_id : NP_001074937.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625347 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform i is encoded by transcript variant 10; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform i protein_id : NP_001074939.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625335 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform d is encoded by transcript variant 4; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform d protein_id : NP_001074933.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625337 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform d is encoded by transcript variant 5; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform d protein_id : NP_001074934.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625345 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform h is encoded by transcript variant 9; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform h protein_id : NP_001074938.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625329 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform a protein_id : NP_065064.2

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625333 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform c protein_id : NP_001074932.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625341 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform f is encoded by transcript variant 7; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform f protein_id : NP_001074936.1

name	Gtf2ird1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125625331 GeneID:57080 MGI:1861942
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; general transcription factor 3; binding factor for early enhancer; Williams-Beuren syndrome chromosome region 11; muscle TFII-I repeat domain-containing protein 1; general transcription factor II I -like; GTF2I repeat domain-containing 1; transcription factor GTF3 alpha 2; transcription factor GTF3 gamma 2 product : general transcription factor II I repeat domain-containing 1 isoform b protein_id : NP_001074931.1

name	LOC100039750 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039750
definition	number : 1 pseudo : _no_value

name	LOC630424 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:630424
definition	number : 1 pseudo : _no_value

name	LOC630424 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:630424
definition	number : 2 pseudo : _no_value

clone name	MSMg01-059C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016O02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-319P10.T7 (MSMg01no319_p10.b1)	MSMg01-319P10.TJ (MSMg01no319_p10.g1)
ACC	AG439331	AG439332
length	725	732
length of high quality (start - end)	344 (67 - 410)	342 (72 - 413)
definition	CHROMAT_FILE: MSMg01no319_p10.b1 PHD_FILE: MSMg01no319_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:22 2005	CHROMAT_FILE: MSMg01no319_p10.g1 PHD_FILE: MSMg01no319_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:22 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTC TCAATCCTGACTTGAAGGTACTATTTTGAAGGTTATAGTGCAGCAATTCT CAACCTGTAGATCAGAACGCCTTGGGTTTGCATATCAGATCTCCTGCCTA TGAGGTGTTTACATTGCGCTTCAGAACAGTAGCAAAACTACAGTTATGAA ATAGCAATGATATATTCTTATGATTGGGAGTCACTGAAACATTAGGATCT GTATTAAAGGGTAGTAGCATTAGGAAGGTTGAGAACCACTGTGCTAAACA GCACTTTAGAATGTGGGACTATCTGGTGGAAGAAAGTCACTAGGGATAAT GTTGGTTTACTTTCTTGGCTTCTTGGCTTCCAGGCATCAGCCTTATGCTC CTGCCACCCCCCCCCCCCTCCTACNANACTGAAATCTCTCTGAAAACATG AGCCAAGTCAAAATAAATCGTCTCATTTTCATGTTTCTGTCAGGTCGTTG CTCATGGAATCTGAAAGGTACAGACTGTGAGCATCAAAGATATGGCTATC AAATGTGACTGGCTAGAGCTGTGGNTCATACCAGGAAAATGTAGGTAGCA TTTATCAGTAGGCAAATCCCAAAGGCTTAAGGACCTTGAGTAGAATGATG TGTAGAATAGGGTATGAGTCTTGACAGTATGGTGTAATCAAAGGAAATCC ACTTGGATTATTTCTGTTCACAGAC	ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXCATAGCAGCCATACTGGAAAGTTTCCACC CAGCATGGTTAGTGGCTTTCCTATAGTCACATAGGTGGGGCCCCTCTCAA TTAACTTTCCTAGACTCTCTAGTACTTCTTGAGACCTATGAGTACCTGCA ATTGGTGTAGAATTCCATACAAATGGCTAAACTGTATCCCTAAAATCTCA GTTGATGTTCTAATGACTCTGCTCAACCCATCCTTCTGATAGAGAAAGCT AACAGTCAGCAAACCTTGTGACGTGTTCTACAAGCAGTCACTGTTAATCT GATGAAGATGCTTTGCTCAGAGGACCACATTTGACAGCAATGCCTTATGT TAGCTCAGTCCTCCCCCTCCCCCGCGCCGTATGCATTGAAGAGAAAGAAG AGCAAATGCATTGTAACCAGAGACACAGAGACAGGTGTCAAGAGAGGAGA AAGTCAGTCCTTTTAAGACTATAGCAAAAAATGAGGGATGGGGGTGAGGA TGTGGNAGGTCNCCCNNNTNCCCCCCCTCCNCCCCNCCCTTCCCNCTTCT TTTCTTCTGCGTGTGGGTGGGGCCGGGTTTGGGTGGGCTCTGGGGGGTTG GGGGGGCCTGGTCGGCTGGTTGCTTTCACCTTTTTATCAGGGGTGACGTT ACGTTGTTGCTTCGTGTTTTCACTTTTTTTTT
quality values	Open. Hide. 17 17 30 30 39 41 33 32 32 28 17 23 11 3 0 3 13 21 27 47 30 28 26 22 22 24 25 21 15 17 10 9 9 8 8 8 8 8 15 15 22 32 41 47 31 31 36 36 36 36 44 44 34 23 16 12 12 11 12 12 12 10 9 9 9 9 15 16 37 37 47 59 53 53 57 57 57 57 57 53 57 57 57 57 53 57 57 57 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 42 42 47 47 27 32 15 28 28 44 34 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 45 45 45 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 59 59 38 30 15 14 14 26 32 50 50 59 44 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 42 39 47 47 59 59 59 59 57 57 57 54 54 57 59 59 68 68 68 68 68 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 47 47 59 37 37 19 16 10 10 12 23 23 23 18 14 10 9 9 9 9 9 3 0 3 0 3 27 27 59 47 47 50 50 50 50 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 54 54 54 54 57 54 54 54 68 68 68 59 59 54 48 48 57 59 68 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 53 53 53 53 48 48 47 47 47 59 59 59 44 37 41 44 44 44 47 47 47 59 59 59 59 59 57 57 57 57 57 57 59 59 59 57 37 34 31 31 39 39 43 44 57 57 57 57 57 59 48 48 48 48 50 50 47 47 43 22 13 9 9 10 15 23 34 41 32 35 31 23 25 3 0 3 25 27 47 47 47 43 35 31 35 39 37 32 36 41 37 37 35 36 36 41 41 47 47 59 59 31 28 14 14 17 21 10 12 10 17 11 12 12 27 27 34 28 24 13 13 30 30 47 46 46 43 47 37 37 24 20 24 19 22 30 37 37 37 30 30 37 37 46 47 39 43 41 41 37 39 32 28 20 20 20 32 32 28 22 19 24 19 23 28 34 34 41 44 44 41 32 37 37 37 37 30 37 32 27 16 12 15 14 12 23 10 8 8 10 13 17 18 32 21 17 8 8 8 12 12 22 22 22 24 27 24 20 23 13 12 14 27 19 15 9 9 9 9 10 10 10 10 10 10	Open. Hide. 10 10 9 9 17 9 9 9 13 17 28 29 37 33 33 42 41 39 39 44 41 41 44 44 34 25 16 9 9 9 9 9 9 9 9 9 9 17 14 28 21 28 35 37 33 33 36 36 36 36 53 53 50 50 41 27 19 14 19 15 23 11 12 12 23 19 30 31 31 31 31 31 35 35 35 53 53 53 53 53 53 57 53 53 59 57 57 57 57 53 53 68 68 68 51 51 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 43 43 43 57 57 57 68 68 68 57 57 57 57 54 59 59 68 68 68 68 68 68 68 57 57 57 57 44 37 43 43 43 43 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 54 54 54 48 54 54 47 47 48 59 59 68 68 68 68 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 48 46 27 25 12 11 9 9 9 12 16 15 9 9 9 8 8 8 8 8 8 8 8 8 19 21 31 59 59 50 53 53 57 57 57 57 59 59 59 59 59 59 59 59 59 57 47 47 39 35 35 35 59 59 59 59 68 68 59 57 57 57 57 48 48 47 47 43 46 47 59 48 37 23 25 12 12 12 34 34 59 59 59 59 59 57 68 68 68 68 68 59 59 59 59 59 57 57 57 48 48 48 48 57 57 59 59 59 59 59 59 59 59 57 59 57 59 57 59 59 59 59 43 44 39 39 43 44 59 39 39 36 37 37 37 17 19 22 18 20 30 39 34 33 33 26 26 13 13 8 3 0 3 7 7 11 3 0 3 21 3 0 0 0 3 0 3 9 7 7 7 8 7 7 9 3 0 3 9 8 3 0 3 7 7 11 8 8 8 3 0 3 6 8 8 15 11 8 8 10 10 6 7 7 9 9 9 10 9 9 9 12 9 9 7 13 10 8 8 8 11 9 8 6 6 6 6 11 10 11 11 15 8 6 6 8 6 9 14 14 19 11 8 8 11 13 15 13 8 8 8 7 6 6 6 6 7 8 8 7 7 8 10 8 8 8 8 8 8 8 8 6 6 9 9 9 9 10 10 8 8 8 8 6 7 8 8 8 9 9 9 8 8 8 8 13 6 6 6 8 9 10 11 11 12 9 9 8 8 8 8 8 8 8 11 10 12 10 10 10 8 10 10 14 16 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no319_p10.g1 MSMg01no319_p10.g1 CHROMAT_FILE:
MSMg01no319_p10.g1 PHD_FILE: MSMg01no319_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:22 2005
         (342 letters)



>mm_chr5_133891044_133891785
          Length = 742

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagcagccatactggaaagtttccacccagcatggttagtggctttcctatagtcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 catagcagccatactggaaagtttccacccagcatggttagtggctttcctatagtcaca 482

                                                                       
Query: 61  taggtggggcccctctcaattaactttcctagactctctagtacttcttgagacctatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taggtggggcccctctcaattaactttcctagactctctagtacttcttgagacctatga 422

                                                                       
Query: 121 gtacctgcaattggtgtagaattccatacaaatggctaaactgtatccctaaaatctcag 180
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctacctgcaattggtgtagaatttcatacaaatggctaaactgtatccctaaaatctcag 362

                                                                       
Query: 181 ttgatgttctaatgactctgctcaacccatccttctgatagagaaagctaacagtcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgatgttctaatgactctgctcaacccatccttctgatagagaaagctaacagtcagca 302

                                                                       
Query: 241 aaccttgtgacgtgttctacaagcagtcactgttaatctgatgaagatgctttgctcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaccttgtgacgtgttctacaagcagtcactgttaatctgatgaagatgctttgctcaga 242

                                                    
Query: 301 ggaccacatttgacagcaatgccttatgttagctcagtcct 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaccacatttgacagcaatgccttatgttagctcagtcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information