BAC Information

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BAC

Clone NameMSMg01-320E01
Chromosome5 (Build37)
Map Location 56,577,122 - 56,577,412
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320E01.T7 (MSMg01no320_e01.b1)MSMg01-320E01.TJ (MSMg01no320_e01.g1)
ACCAG439537
length721719
length of high quality
(start - end)
---291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no320_e01.b1 PHD_FILE: MSMg01no320_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:44 2005CHROMAT_FILE: MSMg01no320_e01.g1 PHD_FILE: MSMg01no320_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXX
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATCAGAGAAACAAAATAGAG
AGAAAAGAGAGTAAAGAAGATTCACCCGCAAGTAGTAAGGAAGGCTTTGT
TTCACAGCAAAACAAGCTTAGAAATAAGAGGATTGGGGATCATTATTATG
GAAGAATTATTTAAAAATCTGTAGAAATTTGGAATTTGACTTTATCATTT
CTTGGTCATTGGGGCTGATTATTACGTGCTTTTACATTAGACAATGATGC
TTTACTTCGATTTCTTATTCCAGGGACAGAAAGATTATATAAGGCAGAAT
ATATAAGCCTGGTATATATTTATGGAGCCCGCGCCCCCAGCAAGCAAGCA
AGCAAGAGAGACAGAGCCAGCAGAGACATAGGTGAGGAGGGATTCAGAAG
CTGAGCATGAATGAGTTGGCACAGACTTAGTCAGTTATTCCAGATAGAGG
ATTCCCCCAGTGTCATGTGGAAAAAAAAAGCCTACCCCGGGACTTAGCAG
GGAGTGGGTAGAAAAGAAGAGCAATGATGGGAAAATATAAATACCATGGT
GACAAGAAATTCAGTGCAAAACATCACTAAAAGTCTTGTCAGAGAGAGGT
GTATAGAATCGAAATGTGATGGGCTCCTAATGGCCATACTGGCAAAACTT
CTATAATAGTTGTAGGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_e01.g1 MSMg01no320_e01.g1 CHROMAT_FILE:
MSMg01no320_e01.g1 PHD_FILE: MSMg01no320_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:44 2005
         (291 letters)



>mm_chr5_56576922_56577612
          Length = 691

 Score =  431 bits (223), Expect = e-125
 Identities = 274/295 (92%), Gaps = 8/295 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatcagagaaacaaaatagagagaaaagagagtaaagaagattcaccc----gcaag 56
           |||||||||||| | | ||||||||||  ||||||||||||||    ||||    |||||
Sbjct: 491 agtgatcagagagatagaatagagagagcagagagtaaagaag----acccaagagcaag 436

                                                                       
Query: 57  tagtaaggaaggctttgtttcacagcaaaacaagcttagaaataagaggattggggatca 116
           ||||||||| ||||||||||   |||| ||||||||||||||||||||||||||||||||
Sbjct: 435 tagtaaggatggctttgttttgtagcagaacaagcttagaaataagaggattggggatca 376

                                                                       
Query: 117 ttattatggaagaattatttaaaaatctgtagaaatttggaatttgactttatcatttct 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttattatggaagaattatttaaaaatctgtagaaatttggaatttgactttatcatttct 316

                                                                       
Query: 177 tggtcattggggctgattattacgtgcttttacattagacaatgatgctttacttcgatt 236
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 315 tggtcattggggctgattattacgtgcttttatattagacaatgatgctttacttcgatt 256

                                                                  
Query: 237 tcttattccagggacagaaagattatataaggcagaatatataagcctggtatat 291
           |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 255 tcttattccagggacagagagattctataaggcagaatatataagcctggtatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)