BAC Information

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BAC

Clone NameMSMg01-320F03
Chromosome5 (Build37)
Map Location 26,541,539 - 26,541,824
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689
Downstream geneLOC664837, 4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320F03.T7 (MSMg01no320_f03.b1)MSMg01-320F03.TJ (MSMg01no320_f03.g1)
ACCAG439584AG439585
length890703
length of high quality
(start - end)
---286 (60 - 345)
definitionCHROMAT_FILE: MSMg01no320_f03.b1 PHD_FILE: MSMg01no320_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:49 2005CHROMAT_FILE: MSMg01no320_f03.g1 PHD_FILE: MSMg01no320_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATCCATAAANNNNAAGAGAAATTTTTCTTTTTTTTTTTAGGCATAT
TCCTCTTATTTTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCAG
AGTACCGCGTATTCATGTTTGAATGGATACAGTATGGTGGTGAATAATCT
TACTGTGCACATGGGCTAAGCCTTATGACCCTCATTCAAGACACTCATTG
CCTTGTGTATCCCTAGGTGGTTTTGACTTCACCTTTTTCTCTATTCAGCT
ACCCTCGTTCTTGCTATTTATTTCAGAAAAAATTATTGTGGACCCTTAAA
TAAGCTAAATTCTTTTTTAATTTTCACAATTTTCTGGCTGGGCACACAAT
CATACTAAATCCCGGTTACAAACATTAATGATTGGTTTAAACGCTTGAAC
CTTCTCTTGATTGTTGTCTAACCTAAAAAAATTAAACGAGCACTATATAC
CGAACGTGCCACTAATTTTTTTTTTTTTTCTCCCCCAACCCCCTCCCTCT
CCCTTCTTAAAATTGTGTAATTTAAGTTTTTTTTTTATTTATTGCACTCT
ATACAAAATTTTTTTGTGTTGTTTTTCTCCGATTAATTGTTATATAATAT
ATTATCTCCACGTTCGCCTATAATTATTACGTGCTTCTTCACCACTTTAA
TTTTAATTTTTATTAAACCGTCTTTCCTTTTACTTTGACTCCACCGATTA
TATTCTCCCATTTTATCTTTCCACTCACATATACATACTATACACCCTCA
TCTTTTGTTTCTTGTTTCTGCTTCTCTATTTTTATCATTTTTACACCCCC
TTCCTTCTATCCCACAACTCACATTTACTATTATAAAACACCCACAACTT
GTCTTAAAACCCATATGCGCGCCCGTTACAAATAATATAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGCAGAGCTCCAGCAAAAACTACAAAAATCAGAGAATAAAC
CCAAGGCAAATGGCAGGGCCACAAAATGCTGGCCAAATAACTCGAGAAAA
TTGGGTATTGCTCATTTTGCTCTGGGACTAGAGATGTTTCTCAGCTGTCT
GAGATGAAGCCCTGACAATGTAAAGAAGGCTCCCACAGGGTCACAGAGGC
ACCTCCCCAGAGGTTGCAGGAGTGAATGTGACCTGGTTTTTAACTTCATT
TTTCTTTCTTTCTGGAACGGGGATTAGTGAACATATGACAATGTAATGAA
CCCAAANTCAAGNCCCCTGGTGTGTGTGCTCCTGAGGTACTGCACCCAGT
GATGGAGAGAAAAAGAGATACTGCACCCAGTGATGGTGTGCCCCTGAGGT
ACTGTACCCAGTGATGGTGTGCCCCTGAGGTACTGTACCCAGTTATGGTG
TGCCCCTGAGGTACTTCACCCAGTAATGGTGTGTCCCTGAGGTACTGCAC
ACAGTGATGGTGTGCCCCTGAGGTACTGCACCCAGTGATGGTGTGCCCCT
GAGGTACTGCTCCCAGTGATGGCGTGCCCCTGAGGTATTACACCCAGTGA
TGATGTGCCCCTGAGGTGTTCACTCTCTGAACCAGAGGCCAGACTCTCTC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_f03.g1 MSMg01no320_f03.g1 CHROMAT_FILE:
MSMg01no320_f03.g1 PHD_FILE: MSMg01no320_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:49 2005
         (286 letters)



>mm_chr5_26541339_26542024
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagagctccagcaaaaactacaaaaatcagagaataaacccaaggcaaatggcagggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agcagagctccagcaaaaactacaaaaatcagagaataaacccaaggcaaatggcagggc 427

                                                                       
Query: 61  cacaaaatgctggccaaataactcgagaaaattgggtattgctcattttgctctgggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cacaaaatgctggccaaataactcgagaaaattgggtattgctcattttgctctgggact 367

                                                                       
Query: 121 agagatgtttctcagctgtctgagatgaagccctgacaatgtaaagaaggctcccacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agagatgtttctcagctgtctgagatgaagccctgacaatgtaaagaaggctcccacagg 307

                                                                       
Query: 181 gtcacagaggcacctccccagaggttgcaggagtgaatgtgacctggtttttaacttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtcacagaggcacctccccagaggttgcaggagtgaatgtgacctggtttttaacttcat 247

                                                         
Query: 241 ttttctttctttctggaacggggattagtgaacatatgacaatgta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttttctttctttctggaacggggattagtgaacatatgacaatgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)