BAC Information

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BAC

Clone NameMSMg01-320J21
Chromosome5 (Build37)
Map Location 118,955,791 - 118,956,018
singlet/doubletsinglet
Overlap genenone
Upstream geneKsr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162
Downstream geneThrap2, LOC100039488, EG665194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J21.T7 (MSMg01no320_j21.b1)MSMg01-320J21.TJ (MSMg01no320_j21.g1)
ACCAG439803AG439804
length728732
length of high quality
(start - end)
231 (129 - 359)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no320_j21.b1 PHD_FILE: MSMg01no320_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:09 2005CHROMAT_FILE: MSMg01no320_j21.g1 PHD_FILE: MSMg01no320_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGTCATTGCCTTTTAGGAAAAGCACCTTTGCCCACTAAGCCAT
GTTTTTCAAGATAGGGTTTTTCTCCGTAGCCCTGGCTATCCTGGAATTCA
CTCTGTAGCCCAGGCTAGCCTCGGACTCAGAGATCTGCCTGCCTCTGCCT
CCTGAGTTCTGGGGTTAAAGGTATGAGACACCACTGCCCAGCTCACTGGC
CCTGATTTTGAACTAAAAGAGAAGTTGAACTGACCTTTCTTGTCCATAGC
TCCCAGATGCCAGTATCACAGGTGTGCCGGGCTGGAGAGCAAGCCCATGA
CTTTCTGCATTCATGCATGCACCCCCCACCACGAGCTACATTTCCAACCT
GTAAACCAGGCTAGCACCATTGAAAGAAATTGAATGACAGGACATCTGAA
TTGGGGGTCGACTTTAGAGTGTCATCCTCTGTCATCTCCCCAGCATATTT
GTCGCTGATGGAAAGAAGGTATGAGACAAAAAGTAGCCAACGTAGGAAGA
TAGGAAGCAGGTGGCTCTCCTCTGCTGCTATCAAAAGCAAAGCAGGCATG
GTAGGCCCTATCCCAAAAGATTTTAAATTCAAACATATAGACATTTATGA
ACAGCCCAGTTCCTGACATGCCTCATGCCGAGGTTCTCCCTAAACCCAGT
GATAATAGGATACAGTCTGATAGCGTGG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTACAAAAAGGTAGACGTCA
CAAAGTGGGAGCAAACTTGCTCCCATCTTCTCCCCACCCAGCGGACACTT
GGCAAGTAGCCAGAGGTGTCGCAGGCTTGTCACAATTTTTAGGGAAAGGC
TCACAGTGGTATCTAGTCCATACAAACCCAGGGTGCTGCTCAACAATGCC
CAAGACAGTTGCCTTCCAACAAGGATGGTCTAGCCTGAATGGTACTGAAT
GCCTGACCACTGTAGTTAAAACAACAAAAAGAAACATGGATGAAGGAACA
TAGCAAATGTATCNCAATAAATTGCCANACAGNACCGATTTCTAGATTCA
AGCACTGGCGGCTCCTGCTCGGGCCAAAAGAAAGGATTCTAAGGCTCTAA
GGCAGCTCAGAGAGACAGTGCGGTGATTGATTAGTAATGTCTGCTGTGGC
CCCATAGCAGAGAAAGGGGCAGCCCTGGTTCCTTGTATTTTTCTGACCCT
GGCTAGGCAAGGGAAACATCTGCCTCTGCTCTGACATTCTGCAATTCTAA
GGTGGGGCTTCTGCAAAGTCGGTCTTCAAAGTTCCGCAGTCAGCATTATT
TACAGAATATTTAAACAGAGCAGGATCCTGCACGCTTGTGTGGTCGGGGA
GCAGTGGCCGAGCTGAGAGCCAGTAACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j21.b1 MSMg01no320_j21.b1 CHROMAT_FILE:
MSMg01no320_j21.b1 PHD_FILE: MSMg01no320_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:09 2005
         (231 letters)



>mm_chr5_118955476_118956106
          Length = 631

 Score =  441 bits (228), Expect = e-128
 Identities = 228/228 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctggctatcctggaattcactctgtagcccaggctagcctcggactcagagatctgcctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctggctatcctggaattcactctgtagcccaggctagcctcggactcagagatctgcctg 484

                                                                       
Query: 64  cctctgcctcctgagttctggggttaaaggtatgagacaccactgcccagctcactggcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cctctgcctcctgagttctggggttaaaggtatgagacaccactgcccagctcactggcc 424

                                                                       
Query: 124 ctgattttgaactaaaagagaagttgaactgacctttcttgtccatagctcccagatgcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctgattttgaactaaaagagaagttgaactgacctttcttgtccatagctcccagatgcc 364

                                                           
Query: 184 agtatcacaggtgtgccgggctggagagcaagcccatgactttctgca 231
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agtatcacaggtgtgccgggctggagagcaagcccatgactttctgca 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)