Query= MSMg01no320_p23.b1 MSMg01no320_p23.b1 CHROMAT_FILE:
MSMg01no320_p23.b1 PHD_FILE: MSMg01no320_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:38 2005
(312 letters)
>mm_chr5_69078030_69078741
Length = 712
Score = 540 bits (279), Expect = e-158
Identities = 304/319 (95%), Gaps = 11/319 (3%)
Strand = Plus / Minus
Query: 1 agcacatgccaaagtctgagtaggatatatgaaggtttgacccttacccatgactgagtc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agcacatgtcaaagtctgagtaggatatatgaaggtttgacccttacccatgactgagtc 356
Query: 61 tttaaaattaaagaggagaggttctttgcaaagggagatgcagaggacaagctttcaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 accaaaattaaagaggagaggttctttgcaaagggagatgcagaggacaagctttcaaat 296
Query: 121 aggtgattgattaaatcagaaagtggaatgtgaggtagagataaaaatctggataattgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aggtgattgattaaatcagaaagtggaatgtgaggtagagataaaaatctggataattgc 236
Query: 181 tgctgtttagaaatggtgaatgtgcattccccaa-----------agaacaaagagaaaa 229
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 235 tgctgtttagaaatggtgaatgtgcattccccaaaaccacgttacagaacaaagagaaaa 176
Query: 230 gaagatgcagaggaagtaaccatagctacaacctttcttctacttacaaatcatctttaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaagatgcagaggaagtaaccatagctacaacctttcttctacttacaaatcatctttaa 116
Query: 290 atcacctttgttctttata 308
|||||||||||||||||||
Sbjct: 115 atcacctttgttctttata 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no320_p23.g1 MSMg01no320_p23.g1 CHROMAT_FILE:
MSMg01no320_p23.g1 PHD_FILE: MSMg01no320_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:38 2005
(364 letters)
>mm_chr5_69057783_69058546
Length = 764
Score = 580 bits (300), Expect = e-170
Identities = 306/308 (99%)
Strand = Plus / Plus
Query: 57 gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagagaaaagagaaaag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagagaaaagagaaaag 316
Query: 117 aaaagaaaggaaaagaaaagaatactaggcacatatagataacacgcacactgaatgaaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaagaaaggaaaagaaaagaatactaggcacatatagataacacgcacactgaatgaaa 376
Query: 177 caaacaaacaaacaaaaaagctactttgctacttgattgttgttcttagtttttatacct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caaacaaacaaacaaaaaagctactttgctacttgattgttgttcttagtttttatacct 436
Query: 237 tctcggtataattgactacatggttttctaaggacttttacattccttcagttcatagta 296
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctcagtataattgactacatggttttctaaggacttttacattccttcagttcatagta 496
Query: 297 agtttaaagaaaaatgaataatttcataattctaaataattctaattcatgttataaatt 356
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 497 agtttaaagaaaaatgaataatttcataattcgaaataattctaattcatgttataaatt 556
Query: 357 aataaggc 364
||||||||
Sbjct: 557 aataaggc 564
Score = 103 bits (53), Expect = 2e-26
Identities = 81/91 (89%), Gaps = 10/91 (10%)
Strand = Plus / Plus
Query: 57 gaagaagaaga--agaagaagaagaagaagaagaagaagaagaagaaga-gaa-aaga-g 111
||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct: 6 gaagaagaagagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag 65
Query: 112 aa-aagaa-aagaaaggaa-aagaa-aagaa 138
|| ||||| ||||| |||| ||||| |||||
Sbjct: 66 aagaagaagaagaa-ggaagaagaagaagaa 95
Score = 95.5 bits (49), Expect = 5e-24
Identities = 78/89 (87%), Gaps = 11/89 (12%)
Strand = Plus / Plus
Query: 58 aagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga-gaa-aaga-gaa- 113
|||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||
Sbjct: 1 aagaagaagaagaaga-gaagaagaagaagaagaagaagaagaagaagaagaagaagaag 59
Query: 114 aagaa-aagaaaggaa-aagaa--aagaa 138
||||| ||||| ||| ||||| |||||
Sbjct: 60 aagaagaagaa--gaagaagaaggaagaa 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 203
Number of extensions: 86
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 3
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space: 268025
Effective search space used: 268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
