BAC Information

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BAC

Clone NameMSMg01-321A08
Chromosome5 (Build37)
Map Location 86,125,342 - 86,289,310
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321A08.T7 (MSMg01no321_a08.b1)MSMg01-321A08.TJ (MSMg01no321_a08.g1)
ACCAG440103AG440104
length742735
length of high quality
(start - end)
307 (70 - 376)342 (75 - 416)
definitionCHROMAT_FILE: MSMg01no321_a08.b1 PHD_FILE: MSMg01no321_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:40 2005CHROMAT_FILE: MSMg01no321_a08.g1 PHD_FILE: MSMg01no321_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,125,342 - 86,125,646)(86,288,974 - 86,289,310)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAAAGTTACCATGGCATGTTTTTGAAAGCACTGAGATACTTGT
TGTTTTCCACTTTATGTTACAATGATAAAAGGTAGCATTGTTGCTGAATA
ATCATTTGTTAAAAATAAAGCTGTTGCCAAGTGAACAGGCATCCTAGTTT
GTCTTATGAAATATTCCCTGGTAAGTGTATTGAGGTTAGAGAGGTTTCCT
AGTAGATGAGGAATGTCTCCTTAAGTTTTCACTGGTGATGTGAAAGTCTA
GGCTTGGAACTGCAGCAATACACAGTAGTGTGTGTACAACATACTCCTGG
TTTAGGACTTTTTATCTTTTGACACTACATCAGTGGTCTGAAATTCTGTT
TTACACTGAACCCCCCCCCTCGACAAAAAATAAATTCCTTGGCAGTTTTG
CAAAAAAACTTCCACAGCATATTGTTAATTTTTTCTACTTTTAAGTACCT
TGGACTAACATAAATCACTTTAATCAGTGAATAAACATTTGGATCTTCCC
ATCACCCTGTTAACACAGAAGCTTGGGAAGGTCCCTCTGGTTCACCATGA
CTCTATCTCCCTCGAAATGCATAGGGACTTCACCAGTCTTCAATATAAGA
TTGCATAAAGTATATACTATAAATATAATTGAAGTGAATAACAGCTTGTT
AAGTTACAATTAACATTATATCAACAAACCTACAAGAATCCA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTTTGTCTTTAGTCAACATGCTTT
CTTCTTCTCTGGATACAAATTAAGAGTTGATTAATCATTTCTAGCCACAC
TATAATTTGAGAATATAGATTATAAGAATTTCAGAACCCTCCTGCTTTTA
AAGAAAAAAGAACACCACCAACAAACAACCCAATTAAAATGGGGTACAGA
GCTAACCAGAGTATTCTCAACAGAGGAATCATTAATGACTGAGAAGCATT
TAAAGAAATGTTCAATGATATTAATCATTAGGGAAATGCAAATAAAAACA
ACTCTGAGATTCCACCTAACACTGACTAGAATGGGTAAGATAAAAAAACC
AAAGGACACATCATGCTCCCCCACAATGTGGAGCAAGGGGAACACTTCTC
CATCAAGGTGGGAGTGCAAACTTGTACACGACTCTGGAAATTATTTAGGC
GATTTCTCAAAAAAATTGGGAAAAGTTGTAGTCCAAGACCTACTATATAA
CTTCCGGGCATATACCCAAAAGAGGGTCCACCATACTACAAGGACACTTG
CTCAACTATGTTCATAGCAGCTTTACTTGTAATAACCAGAAACAAGAAAC
AACCTAGATGTCCCTCAACTGAAGAATGGATAAAGAAAATATGGTTTATT
TACACAGTGGAATATTACTCAGCCATTAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_a08.b1 MSMg01no321_a08.b1 CHROMAT_FILE:
MSMg01no321_a08.b1 PHD_FILE: MSMg01no321_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:40 2005
         (307 letters)



>mm_chr5_86125142_86125848
          Length = 707

 Score =  543 bits (281), Expect = e-159
 Identities = 299/305 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcatgtttttgaaagcactgagatacttgttgttttccactttatgttacaatgataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcatgtttttgaaagcactgagatacttgttgttttccactttatgttacaatgataaa 260

                                                                       
Query: 61  aggtagcattgttgctgaataatcatttgttaaaaataaagctgttgccaagtgaacagg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcagcattgttgctgaataatcatttgttaaaaataaagctgttgccaagtgaacagg 320

                                                                       
Query: 121 catcctagtttgtcttatgaaatattccctggtaagtgtattgaggttagagaggtttcc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcctagtttgtcttatgaaatattccctggtaagtgtattgaggttagagaggtttcc 380

                                                                       
Query: 181 tagtagatgaggaatgtctccttaagttttcactggtgatgtgaaagtctaggcttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tagtagatgaggaatgtctccttaagttttcactggtgatgtgaaagtccaggcttggaa 440

                                                                       
Query: 241 ctgcagcaatacacagtagtgtgtgtacaacatactcctggtttaggactttttatcttt 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 441 ctgcagcaatacacagtagtgggtgtacaacatactcctggtttaggacttttcaccttt 500

                
Query: 301 tgaca 305
           |||||
Sbjct: 501 tgaca 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_a08.g1 MSMg01no321_a08.g1 CHROMAT_FILE:
MSMg01no321_a08.g1 PHD_FILE: MSMg01no321_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:40 2005
         (342 letters)



>mm_chr5_86288974_86289715
          Length = 742

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattttgtctttagtcaacatgctttcttcttctctggatacaaattaagagttgattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aattttgtctttagtcaacatgctttcttcttctctggatacaaattaagagttgattaa 278

                                                                       
Query: 61  tcatttctagccacactataatttgagaatatagattataagaatttcagaaccctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcatttctagccacactataatttgagaatatagattataagaatttcagaaccctcctg 218

                                                                       
Query: 121 cttttaaagaaaaaagaacaccaccaacaaacaacccaattaaaatggggtacagagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cttttaaagaaaaaagaacaccaccaacaaacaacccaattaaaatggggtacagagcta 158

                                                                       
Query: 181 accagagtattctcaacagaggaatcattaatgactgagaagcatttaaagaaatgttca 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 157 accagagtattctcaacagaggaatctttaatgactgagaagcatttaaagaaatgttca 98

                                                                       
Query: 241 atgatattaatcattagggaaatgcaaataaaaacaactctgagattccacctaacactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  atgatattaatcattagggaaatgcaaataaaaacaactctgagattccacctaacactg 38

                                                
Query: 301 actagaatgggtaagataaaaaaaccaaaggacacat 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  actagaatgggtaagataaaaaaaccaaaggacacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)