Query= MSMg01no321_i07.b1 MSMg01no321_i07.b1 CHROMAT_FILE:
MSMg01no321_i07.b1 PHD_FILE: MSMg01no321_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:16 2005
(326 letters)
>mm_chr5_133345496_133346221
Length = 726
Score = 567 bits (293), Expect = e-166
Identities = 302/305 (99%)
Strand = Plus / Minus
Query: 22 agtatgacattgatatgacaattcagtgattgccatgcagaaaccagaagtagtgtacag 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agtatgacattgatatgacaattcagtgattgccatgcagaaaccagaagtagtgtacag 312
Query: 82 atatttaactctgattctgacacagattgcagaggccagaaaaaaaccctaatgcaatat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atatttaactctgattctgacacagattgcagaggccagaaaaaaaccctaatgcaatat 252
Query: 142 catgacaaagcatgtccaggccactcattatggttcacagctgtaatcctagaactcaag 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 catgacaaagcatgtccaggccactcattatggttcacagctgtaatcctagaactcaag 192
Query: 202 aggctatcactttgagtcttgggccattttggattatcatgaaatctagaccaagctgag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aggctatcactttgagtcttgggccattttggattatcatgaaatctagaccaagctgag 132
Query: 262 ctacactgtgcattcatgtctttatatacatatgtgtgtgtgtgtgtgtatatatatata 321
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 131 ctacactgtgcagccatgtctttatatacatatgtgtgtgtgtgtgtgtgtatatatata 72
Query: 322 tatat 326
|||||
Sbjct: 71 tatat 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_i07.g1 MSMg01no321_i07.g1 CHROMAT_FILE:
MSMg01no321_i07.g1 PHD_FILE: MSMg01no321_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:17 2005
(288 letters)
>mm_chr5_133139168_133139854
Length = 687
Score = 369 bits (191), Expect = e-107
Identities = 276/335 (82%), Gaps = 50/335 (14%)
Strand = Plus / Plus
Query: 1 attccaggtcagcctgggctggctgtaatagtaggaccttgactccaaaaagtatccccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 156 attccaggtcagcctgggctggctgtaatagtaggaccttgactccaaaatgtagccccc 215
Query: 61 tgtcccggcacacacggg--------------------------------catacacaca 88
|||||||||||||||||| || |||||||
Sbjct: 216 tgtcccggcacacacgggcacacaaacacacacacacacacacacacacacacacacaca 275
Query: 89 cacacgcacacgta---------------agcatgcacacaaacctttgccttccccttt 133
||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct: 276 cacacgcacac--acacacacacacacacagcatgcacacaaacctttgccctccccttt 333
Query: 134 ctttttctctgcaggctgtgacaggaaggtgggtggggctgaggatccagtcacatggtc 193
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctttctctctgcaggctgtgacaggaaggtgggtggggctgaggatccagtcacatggtc 393
Query: 194 tcatcctaggattgaggcttgattacaggtgcaaggcacggagaatccttatgttggtga 253
|||| ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||
Sbjct: 394 tcattctaggattgaggcttgattacaggtgcaaggcatggaggatc-ttaggttggtga 452
Query: 254 ctctctgggtgacgccaggcaatggaatccagagc 288
|||||||||||||||||||||||||||||||||||
Sbjct: 453 ctctctgggtgacgccaggcaatggaatccagagc 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
