BAC Information

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BAC

Clone NameMSMg01-321I15
Chromosome5 (Build37)
Map Location 69,431,559 - 69,431,793
singlet/doubletsinglet
Overlap geneLOC666996
Upstream geneAY616753
Downstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321I15.T7 (MSMg01no321_i15.b1)MSMg01-321I15.TJ (MSMg01no321_i15.g1)
ACCAG440481AG440482
length739733
length of high quality
(start - end)
237 (119 - 355)484 (70 - 553)
definitionCHROMAT_FILE: MSMg01no321_i15.b1 PHD_FILE: MSMg01no321_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:18 2005CHROMAT_FILE: MSMg01no321_i15.g1 PHD_FILE: MSMg01no321_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTAATTACCCTTCCCTGCTGGGGCATTTAGCCTTTAGTAGCCTTGAGGT
CTAAACTGTGTTGAACGTAAATCCTCATTAATTTAAAGTAAAAGAAAGTC
ACAAATGTAGTAGTCACTTACAATACTCTATTTTCTAATTCAAAGTGATG
GGGAATTAGAAGTAAGAAAACTATTCTCTAGACAGCTAGTCAGGTCACAG
ACATAAGCAAACAAAAGTGTATGTATGTCCTGGCAAAACTGGAAGCTAAG
TGTAAGAAAAAATGTTTCTTAGTAAACTCTACACAATGAGTGAAAAAGGC
TAGTTTTTTTATAAAGAGCTCAGGATTTCAAAGACTACCCAGCCTCATTA
AAAAGAATACCCCCCTAACCAAAAAAACAATTGTCAGGCTTTCTTCTTTT
TAATTTTCTGATTTCTTTTACATGGGGCCTATGGTGGGCTTTTCCTGAGT
CTGTACTCTTCCATTCTATCTCTTGACCAATCATTCAATCCCTTGACTCT
ACCCATTGAACTCTCCAAATATTTTAATTAGATAATTAGTTTTACCACAA
CCTGATGCTTATATTGTATATACACATGAATAAATTGGCCCCTTCCTACG
TTATAAAAGCAATTCCTGTTCCTAGCATTGCTTGTCAATTCATGCCCACA
TCTTCCCTTGCTGAAGGGAATTGCTACTCTACACTTCTN
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATAG
GGTTATTTGGTTCTCTGGAGTCTAACTTTATGAGTTCTTTGTATATATTA
GATATTAGCCCTTTATTGGATGTAGGGTTGGTAAAGATCTTTTCCCAATC
TGTTGGTTGCCATTTTGTTCTATTGACAGTGTCCTTTGCCTTACAGAAGC
TTTGCAATTTTATGAGATCCCATTTGTTAATTCTTGATCTTAGAGCATAA
GCTATGTTCTGTTCAGGAAAATTGCCCCCGTGACCATGTGCTTGAGGCTC
TTCCCCACTTTAATTTCTATTAGTTTCAGTGTTTCCGGTTTTATGTGGAG
GTCCCCCCCCCACTAGGACTTGAGCTATGTACAGGGATATAAATTTGCAT
TCTTCTACAAGCGAGCTGCCAGTTGAACCAGCACCATTTGTTGAAAATGC
TTTTTTCCACTGGGTGGTTATAGCTACTTTGTCAAAGATCACATGACCAT
AGGTGTGCGTGGGTTCATTTCTGGGTCTTTAATTCTATTGCCTTGATCTA
CCTACCTGTACAAGTACCATGCGGTTTTTATCACTATTGCTCTGTATTAT
AGCTTGATTTCATGCATGATGATTCCTCCAGAAGTTTTTCTTTTGCTTAG
AATATGGCTGTGCTTCCTGTGTTGCAGCCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_i15.b1 MSMg01no321_i15.b1 CHROMAT_FILE:
MSMg01no321_i15.b1 PHD_FILE: MSMg01no321_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:18 2005
         (237 letters)



>mm_chr5_69431359_69431995
          Length = 637

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcctcattaatttaaagtaaaagaaagtcacaaatgtagtagtcacttacaatactc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatcctcattaatttgaagtaaaagaaagtcacaaatgtagtagtcacttacaatactc 260

                                                                       
Query: 61  tattttctaattcaaagtgatggggaattagaagtaagaaaactattctctagacagcta 120
           ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 261 tatcttctaattcaaagtgatggggaattagaagtaagaaaactaatctctagacaacta 320

                                                                       
Query: 121 gtcaggtcacagacataagcaaacaaaagtgtatgtatgtcctggcaaaactggaagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaggtcacagacataagcaaacaaaagtgtatgtatgtcctggcaaaactggaagcta 380

                                                                  
Query: 181 agtgtaagaaaaaatgtttcttagtaaactctacacaatgagtgaaaaaggctag 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgtaagaaaaaatgtttcttagtaaactctacacaatgagtgaaaaaggctag 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)