BAC Information

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BAC

Clone NameMSMg01-321L06
Chromosome5 (Build37)
Map Location 7,030,451 - 7,030,970
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321L06.T7 (MSMg01no321_l06.b1)MSMg01-321L06.TJ (MSMg01no321_l06.g1)
ACCAG440603AG440604
length729741
length of high quality
(start - end)
525 (48 - 572)321 (76 - 396)
definitionCHROMAT_FILE: MSMg01no321_l06.b1 PHD_FILE: MSMg01no321_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:30 2005CHROMAT_FILE: MSMg01no321_l06.g1 PHD_FILE: MSMg01no321_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCTTTGTTTACCCATTAAATTACAGGAGTGAATATTATTTGT
CGATCACTATTAAATAATAAGATCTTTAGGGATTGGAGACAGAGGAACTA
TCCAAATGATGTATTATAAATACTACATGCCCAACTCAAGAGGACAAGTT
TTTCAAAGCCATCTGGAACCTGTCCTTAAAATACATAACAGCCATTATTT
GCAAGCCATCCCCAACCCTTTTCTAGAATGAACCAAACACTATTAACACT
TTCCAATAATGAAGCATGGAACTAAAGGAAATGGCAATGCTACTTGGTGG
AACTGGGCTGGCTGGACAATATCATTCTTATCAACACTCCGATTGCACAT
TCTCACTGTGTATATCATACCACACCGAGCCAATGCACATAGCTAGATTA
GTAGTAAATGCTCACAAAATGCGATGATTAACGATGATATGCTAATGACA
CTCTAGTTTTTGTAAATCTAGGAGGCAGCGCTTGGAAATTTTGATTACAT
TACATTTAGAAATTTATTAATTAATCAACAAAAATATGTTTCTGCATTGC
TCTCCAATATTTTATAAAGAATGTCTACCTGTAGCATAGGACAAGAACAC
GTGTCACACAACTTTCATATTTTTGATCTCATCTTGCCTTCCTTAAAAGG
CATATTTAGTAGTCCGTTTTAAACTTGAC
CCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATT
GAGAGTTTGGCCGGGTATAGTACCCTGGGCTGGCATTTGTGTTCTCTTAG
TGTCTGTATAACATCTTTCCAGGCTCTTCTGGCTTTCATAGTCTGTGGTG
AAAAGTCTGTTGTAATTCTGATAGGTCTGTCTTTATATGTTACTTGGCCT
TTCTCCCTTACTGCTTTTAATATTCTCTCTTTATTTAGTGCATTTGTTGT
TCTGATTATTATGTGTCGGTAGGAATTCCTTTTCTGGTCCAGTCTATTTG
AAGTTCTATAGGCTTCTTGTATGTTCATAGGCATGTCATTCTTTAGGTTT
GGGAAGTTTTCTTATACCCCCCCGCTGAATATATTTGCTGGTCCTTTAAG
TTGAAAATCTTCATTCTCATCAACTCCTATTATCCGTAGGTTTGGTCTTC
TCATTGCGTCCTGTATTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCGT
TTTGTAATATCTTTGATTGTTGTGCCGATATTCTTCTATGTAATCTTCTT
GCACCTGATTTTCTTTCTTCCATCTCTTTGAATTCTGTTTGCTGATGCTC
CGCTTCCATGGGTCCCTGAACTTCTTTCCCCAACTTATTCTATTCTTCAG
TATGTTGTTTTCTTTTCTTTTCATTTCCCTCCTTCGCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_l06.b1 MSMg01no321_l06.b1 CHROMAT_FILE:
MSMg01no321_l06.b1 PHD_FILE: MSMg01no321_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:30 2005
         (525 letters)



>mm_chr5_7030246_7031170
          Length = 925

 Score =  932 bits (482), Expect = 0.0
 Identities = 511/524 (97%), Gaps = 7/524 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctttgtt---tacccattaaattacaggagtgaatattatttgtcgatcact 61
           ||||||||||||| |   ||    ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacctttgctaagta----ttaaattacaggagtgaatattatttgtcgatcact 261

                                                                       
Query: 62  attaaataataagatctttagggattggagacagaggaactatccaaatgatgtattata 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attaaataataagatctttagggattggagacagaggaactatccaaatgatgtattata 321

                                                                       
Query: 122 aatactacatgcccaactcaagaggacaagtttttcaaagccatctggaacctgtcctta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aatactacatgcccaactcaagaggacaagtttttcaaagccatctggaacctgtcctta 381

                                                                       
Query: 182 aaatacataacagccattatttgcaagccatccccaacccttttctagaatgaaccaaac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatacataacagccattatttgcaagccatccccaacccttttctagaatgaaccaaac 441

                                                                       
Query: 242 actattaacactttccaataatgaagcatggaactaaaggaaatggcaatgctacttggt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actattaacactttccaataatgaagcatggaactaaaggaaatggcaatgctacttggt 501

                                                                       
Query: 302 ggaactgggctggctggacaatatcattcttatcaacactccgattgcacattctcactg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggaactgggctggctggacaatatcattcttatcaacactccgattgcacattctcactg 561

                                                                       
Query: 362 tgtatatcataccacaccgagccaatgcacatagctagattagtagtaaatgctcacaaa 421
           ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtatatcataccacaaggagtcaatgcacatagctagattagtagtaaatgctcacaaa 621

                                                                       
Query: 422 atgcgatgattaacgatgatatgctaatgacactctagtttttgtaaatctaggaggcag 481
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 622 atgcgatgattaacgatgatatgccaatgaaactctagtttttgtaaatctaggaggcag 681

                                                       
Query: 482 cgcttggaaattttgattacattacatttagaaatttattaatt 525
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cgcttggaaattttgattacattacatttagaaatttattaatt 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)