BAC Information

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BAC

Clone NameMSMg01-322O11
Chromosome5 (Build37)
Map Location 42,522,234 - 42,522,507
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322O11.T7 (MSMg01no322_o11.b1)MSMg01-322O11.TJ (MSMg01no322_o11.g1)
ACCAG441472AG441473
length740747
length of high quality
(start - end)
370 (45 - 414)290 (80 - 369)
definitionCHROMAT_FILE: MSMg01no322_o11.b1 PHD_FILE: MSMg01no322_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:58 2005CHROMAT_FILE: MSMg01no322_o11.g1 PHD_FILE: MSMg01no322_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTATCCCTGTACCCCATTTTTAATGGGGTTATTTGAATTTC
TGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGCTATTAGTCCCTTA
TCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTT
TGTCTTATTGACAGTGTCTTTTGCCTAACAGAAGCTTTGCAATTTTATGA
GGTCCCATTTGTCAATTCTTGATCTTACAACACAAGCCATTGCTGTTCTG
TTTAGGAATTTTTCCTTTGTGCCCATATCTTTGAGGCTTTTCCTCACTTT
CTCCTCTATTAATTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTTATCC
ACTTAGACTTGAGCTCCCCACAAGGAGATAAGAAAGGATCAATTTGCATT
CTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGAC
CATAGGTGTGTGGAGAGAAACTCAAACCAATCCCATTAAAATCAGGGACT
AGACTAGGCTGCCCACTTTCTCCCTACCTATTCAGTATAGTACTTGAAGT
TCTAGACAGAACAATTCGACAACAAAAGGACAGCAAGGGGATACAAATTG
GAAAGTAAGAAGTCTAAATATCACTATTTGCAGATGATAN
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCTGACCCCTGGAGACTT
CTCTTTCTTCAGTTCCTGAGATGGAAAAAAAAATGAAAGCCTGAATCTTA
TTAAGCAGATCCACAGGACTTGAATAGAAAGAAATATGAAAACACAATTC
TGTGATCAAGCCTGGAAAGGAAAATAACTTCAGAGGGAGCCAGACATGCT
TTGGAATTCTATAGCTACATCGTGAGATGAAGACAGCATATGTGTGTATG
GTGGTATGTGTATGAGTATGTGTGTGTGTACCTGTGTGTATGTGTGCGTG
TTTGTGTGTGTTTATCTGCATAACGCAAAAACCTTATTTGAAAATTTACA
GGAGATGTTATTTTTTACCCCCCCCATCATAATATAAACCAATTATCTTT
AATCATGCAACTTATATTTTATTGCTAGGACAAACCCTGGGAGAAATGAC
TCTGTTCTATAGCTCCATAGCTGTACAGATCAGTACGGCTTCCCCTAAAC
CCTGTATCATTCTCTTTCCTTACTCATGTTTTACTAGGCTATCTATACAT
TTCTTTCTATATTCCCATGATGCTGTGTCTCATATCCACTCACATTTTTC
GTTTATGTCTTTTTAACCCACACTTTTTCGTTTAAATATTTATTTTGCTC
CCATTCCCTTGTTTCCCTTTGTTCTTTAACTTTTCAGTATTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_o11.g1 MSMg01no322_o11.g1 CHROMAT_FILE:
MSMg01no322_o11.g1 PHD_FILE: MSMg01no322_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:58 2005
         (290 letters)



>mm_chr5_42522034_42522723
          Length = 690

 Score =  487 bits (252), Expect = e-142
 Identities = 270/278 (97%), Gaps = 4/278 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggctgacccctggagacttctctttcttcagttcctgagatggaaaaaaaaatgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggctgacccctggagacttctctttcttcagttcctgagatggaaaaaaaaatgaaag 260

                                                                       
Query: 61  cctgaatcttattaagcagatccacaggacttgaatagaaagaaatatgaaaacacaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgaatcttattaagcagatccacaggacttgaatagaaagaaatatgaaaacacaatt 320

                                                                       
Query: 121 ctgtgatcaagcctggaaaggaaaataacttcagagggagccagacatgctttggaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgatcaagcctggaaaggaaaataacttcagagggagccagacatgctttggaattc 380

                                                                       
Query: 181 tatagctacatcgtgagatgaagacagcatatgtgtgtatggtggtatgtgtatgagtat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tatagctacatcgtgagatgaagacagcatatgtgtgtatggtggtatgtgtgtgagtat 440

                                                 
Query: 241 gtgtgtgtgtacctgtgtgtatgtgtgcgtgtttgtgt 278
           ||||||||||    |||||| |||||| |||| |||||
Sbjct: 441 gtgtgtgtgt----gtgtgtgtgtgtgtgtgtgtgtgt 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)