Query= MSMg01no323_p06.b1 MSMg01no323_p06.b1 CHROMAT_FILE:
MSMg01no323_p06.b1 PHD_FILE: MSMg01no323_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:05 2005
(606 letters)
>mm_chr5_117698379_117699383
Length = 1005
Score = 1060 bits (548), Expect = 0.0
Identities = 581/606 (95%), Gaps = 23/606 (3%)
Strand = Plus / Plus
Query: 1 aggccagacacgggagtgtgtgcctgtgatctcggcctggcgcactgtgggggtggagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aggccagacacgggagtgtgtgcctgtgatctcggcctggcgcactgtgggggtggagac 282
Query: 61 agaagatccccagagctcgctgctgagccagcctggtcagaaccctgagctccaggctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agaagatccccagagctcgctgctgagccagcctggtcagaaccctgagctccaggctga 342
Query: 121 agccataggtggagagcaactgaggaaggcactcactgtcaacctctggcctccacgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agccataggtggagagcaactgaggaaggcactcactgtcaacctctggcctccacgctc 402
Query: 181 acactcatgatgagtgtgctgcacacccaacacacacacacacacacacacacacacaca 240
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acactcatgatgagtgtgctgcacacccaacacacacacacacaca-------------- 448
Query: 241 cacacacaggggaatactggaataaaaagttattatctcgatcaaacatacctatctgga 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 449 --------ggggaatactggaataaaaagttaatatctcgatcaaacatacctatctgga 500
Query: 301 aacggccactgtactgtcatatttgtggtggggggaaaaaaatccaaaccctaaagggac 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 aacggccactgtactgtcatatttgtggtggggg-aaaaaaatccaaaccctaaagggac 559
Query: 361 tgtatggtctctgttgaccagaaattgttttctttttttccctaaagttgtctttgtgtg 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtatggtctctgttgagcagaaattgttttctttttttccctaaagttgtctttgtgtg 619
Query: 421 tggtatgagcatatggagttgaaacttatacacatcgctcaaaccacttccttgtctccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggtatgagcatatggagttgaaacttatacacatcgctcaaaccacttccttgtctccc 679
Query: 481 tagtgagacaagcttgcaatcccagcacttgggagatggaggcaggaggcttgccatgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagtgagacaagcttgcaatcccagcacttgggagatggaggcaggaggcttgccatgaa 739
Query: 541 ggtcaaggtcccctgagcttcatggggacaccctgtctcaacaacaataaaaaaagatgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggtcaaggtcccctgagcttcatggggacaccctgtctcaacaacaataaaaaaagatgt 799
Query: 601 ctgggg 606
||||||
Sbjct: 800 ctgggg 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1005
Length adjustment: 10
Effective length of query: 596
Effective length of database: 995
Effective search space: 593020
Effective search space used: 593020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_p06.g1 MSMg01no323_p06.g1 CHROMAT_FILE:
MSMg01no323_p06.g1 PHD_FILE: MSMg01no323_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:06 2005
(670 letters)
>mm_chr5_117872598_117873667
Length = 1070
Score = 1131 bits (585), Expect = 0.0
Identities = 625/640 (97%), Gaps = 3/640 (0%)
Strand = Plus / Minus
Query: 1 cttcccagnctctatatcctgtttctgggcatttctcatcctgccccaccctgactccac 60
|||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct: 640 cttcccagtctctatatcctgtttctgggtacttctcatcctgccttaccctgactccac 581
Query: 61 ttccccagcagtgtgcctagctcaatccactctggaagtttgttcatactgtgccctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttccccagcagtgtgcctagctcaatccactctggaagtttgttcatactgtgccctcag 521
Query: 121 cccagaacactcttccccaagggaggctctatggtcagctcacaggcattccctgcacca 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 520 cccagaacactcttccccaagggaggctctatggtcacctcacaggcattccctgcacca 461
Query: 181 agggaggctctatggtcagctcacaggcattccctgcacctccatttagtttcaccatca 240
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 460 agggaggctctatggtcagctcacaggcattccctgcacctccgttttgtttcaccatca 401
Query: 241 agatgaatattcaaattagattaaaatattcaaatgcttctcagctcctgggatagcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agatgaatattcaaattagattaaaatattcaaatgcttctcagctcctgggatagcagc 341
Query: 301 catgttgactctggcttgtcctttccccgtggctggctaatgggtcacttgttacgtttg 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 340 catgttgactctggcttgtccacaccccgtggctggctaatgggtcacttgttacgtttg 281
Query: 361 caaacagaggctaaagataacaggcactggggactgtcctcttacaatgctgcctctacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 caaacagaggctaaagataacaggcactggggactgtcctcttacaatgctgcctctacc 221
Query: 421 tcattgggagaaaaccaggttatccttctgaggtaatgggg---ggggggagatactgag 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 220 tcattgggagaaaaccaggttatccttctgaggtaatggggggtggggggagatactgag 161
Query: 478 gcagccagccatgtgaggaaacgtatcttgagtcctcaagacttaatggagccattggat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gcagccagccatgtgaggaaacgtatcttgagtcctcaagacttaatggagccattggat 101
Query: 538 gaacacaagctcattaggacccagggtagccactaatcttgaggtggctttttctatagg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 gaacacaagctcattaggacccagggtagccactaatcttgaggtggctttttctatagg 41
Query: 598 aaagatatctatgcaaaatcgtgtgggggggggtcaacct 637
||||||||||||||||||||||| ||||||||||||||||
Sbjct: 40 aaagatatctatgcaaaatcgtgggggggggggtcaacct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
