Query= MSMg01no323_p18.b1 MSMg01no323_p18.b1 CHROMAT_FILE:
MSMg01no323_p18.b1 PHD_FILE: MSMg01no323_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:10 2005
(660 letters)
>mm_chr5_103967617_103968676
Length = 1060
Score = 1222 bits (632), Expect = 0.0
Identities = 653/660 (98%)
Strand = Plus / Plus
Query: 1 aattattattacagtgatggtctgtgtatcaaagggttgttacaaagtaacattcatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattattattacagtgatggtctgtgtatcaaagggttgttacaaagtaacattcatacc 260
Query: 61 tatagagcacttcaagtgtatccagcagatggtctgtttatcaaagggttgttacaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagagcacttcaagtgtatccagcagatggtctgtttatcaaagggttgttacaaagt 320
Query: 121 agcattcatacctatagaaaacttcaagcagagcaggcttggccatacattgagtggaaa 180
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aacattcatacctatagaaaacttcaagcagagcagtcttggccatacattgagtggaaa 380
Query: 181 tgagcttgtggcatatgtaaggttcagtccccatcagtccctctactactaatcggtaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcttgtggcatatgtaaggttcagtccccatcagtccctctactactaatcggtaac 440
Query: 241 atggcgccatgagtgccagtagtaattgtgttggtagcagcagtagtagatgcttcactg 300
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 441 atggcgccatgagtgccagtagtaattgtggtggtagcagcagtagtagacgcttcactg 500
Query: 301 gcactgtgctgtgtgcttctgtgctacaatacacactgcatgccacacagcaggagcatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcactgtgctgtgtgcttctgtgctacaatacacactgcatgccacacagcaggagcatg 560
Query: 361 gtcatgtacgaccagtcttaggaaagaagctgaactttcagagtctcattttctttctcc 420
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gtcatgtacgaacagtcttaggaaagaagctgaattttcagagtctcattttctttctcc 620
Query: 421 acggaagggagcactctgcgcatgtcacagactcaatctgaagcacagccctgctgttag 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acggaagggagcactctgcacatgtcacagactcaatctgaagcacagccctgctgttag 680
Query: 481 actccagctcctgttgtcttaactgttggtccacgctgacgtatgttccagtagaaggcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actccagctcctgttgtcttaactgttggtccacgctgacgtatgttccagtagaaggcc 740
Query: 541 gtgggatggatgagatcagctgtggttacactcacatcctctgtctgagacggtagctgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgggatggatgagatcagctgtggttacactcacatcctctgtctgagacggtagctgt 800
Query: 601 gagcattttgccatgtttaggagacaaaacctaagtgaactggtcaccattattgctgcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagcattttgccatgtttaggagacaaaacctaagtgaactggtcaccattattgctgcc 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_p18.g1 MSMg01no323_p18.g1 CHROMAT_FILE:
MSMg01no323_p18.g1 PHD_FILE: MSMg01no323_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:10 2005
(632 letters)
>mm_chr5_104144997_104146029
Length = 1033
Score = 988 bits (511), Expect = 0.0
Identities = 536/545 (98%), Gaps = 5/545 (0%)
Strand = Plus / Minus
Query: 90 acgtgagcggctctgcagcataacattccaggattcctaaaacttaaaattctcaaaaac 149
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1033 acgtgagcggctctgcagcataacattccagggttcctaaaacttaaaattctcaaaaac 974
Query: 150 tgaaaatctggattgctacatgaaatatctgcagataatcttcttgaaatgctgtgaaga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 tgaaaatctggattgctacatgaaatatctgcagataatcttcttgaaatgctgtgaaga 914
Query: 210 gccaaccaaagcccatatgtagagcagatcaaccacgaatgacaccagcttacaaattct 269
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 913 gccaaccaaagcccatatgtagagcagatcaaccacgagtgccaccagcttacaaattct 854
Query: 270 catttattaaaaaaaaaaaaaacccgaagtcatttaaatgtcagctaagaatacaggcct 329
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 cattaa--aaaaaaaaaaaaaacccgaagtcatttaaatgtcagctaagaatacaggcct 796
Query: 330 ggagtaggaaaggcctttggaagtacagtcaaaaccaatctataaaggacaaggcattta 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggagtaggaaaggcctttggaagtacagtcaaaaccaatctataaaggacaaggcattta 736
Query: 390 tgcaagaacttatgtgtagccaaaagtatgaacaaacttaaagacaaatgaaggcagttt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgcaagaacttatgtgtagccaaaagtatgaacaaacttaaagacaaatgaaggcagttt 676
Query: 450 tatactcggtcttagaaggtcccatgttgtccctgtagtaggagaggagaatgtacc-ag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 675 tatactcggtcttagaaggtcccatgttgtccctgtagtaggagaggagaatgtaccaag 616
Query: 509 attcacaacagga-cctccagatcacaacactgaagtccatagaggggaggaagcaggaa 567
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 attcacaacaggaccct-cagatcacaacactgaagtccatagaggggaggaagcaggaa 557
Query: 568 ggacagacttgtcctgagttcccaggttccatttcttcttactcaataaatactaattta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggacagacttgtcctgagttcccaggttccatttcttcttactcaataaatactaattta 497
Query: 628 ctgag 632
|||||
Sbjct: 496 ctgag 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
