Query= MSMg01no324_b16.b1 MSMg01no324_b16.b1 CHROMAT_FILE:
MSMg01no324_b16.b1 PHD_FILE: MSMg01no324_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:20 2005
(613 letters)
>mm_chr5_119879627_119880638
Length = 1012
Score = 733 bits (379), Expect = 0.0
Identities = 406/415 (97%), Gaps = 4/415 (0%)
Strand = Plus / Minus
Query: 1 aaaagtctgcacataacagtctagaaggtttccatatgccaggatcattctagatcttca 60
||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 412 aaaagtctgcacacaacagtct-gcaggtttccatatgccaggatcattctagatcttca 354
Query: 61 aagtaacatataagtatgatacacaaggtctctt-gcagcagtggtgaagattgctcaag 119
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct: 353 aagtaacatataagtatgatacacaaggtct-ttcgcagcagtggggaagattgctcaag 295
Query: 120 caccagtgaatggtctcacatccagcatgacatcagacagggacacatactgtggagatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caccagtgaatggtctcacatccagcatgacatcagacagggacacatactgtggagatg 235
Query: 180 ccctgataggaagatggaggtacagtgaggtcattcctagtttcctttctgtggctgtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ccctgataggaagatggaggtacagtgaggtcattcctagtttcctttctgtggctgtga 175
Query: 240 tgaaaacatcttggcaatgggggtgttgggtgaggggagctatttggcttacacttcact 299
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 174 tgaaaacatcttagcaatgggggtgttgggtgaggggagctatttggctt-cacttcact 116
Query: 300 tgcaggttgcagtccatcactccatcaccgaatgatctagaaggcaggcctgcccacact 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 115 tgcaggttgcagtccatcactccgtcaccgaatgatctagaaggcaggcctgcccacact 56
Query: 360 attccagtcagaatcatctccacacaaggaactcactcacagccaagaagtacag 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 attccagtcagaatcatctccacacaaggaactcactcacagccaagaagtacag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space: 604206
Effective search space used: 604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_b16.g1 MSMg01no324_b16.g1 CHROMAT_FILE:
MSMg01no324_b16.g1 PHD_FILE: MSMg01no324_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:20 2005
(668 letters)
>mm_chr5_119722748_119723817
Length = 1070
Score = 1228 bits (635), Expect = 0.0
Identities = 662/673 (98%), Gaps = 5/673 (0%)
Strand = Plus / Plus
Query: 1 ctggtgggtcccaacccaaactcatcctcctctgcctctgcccttgcccttaaactctga 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ctggtgggtcccaacccaaactcatcctcctctgcctctgtccttgcccttaaactctga 260
Query: 61 gccatcatcttcctgtgttccacacatttccattgctttctatgattctgagttccagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatcatcttcctgtgttccacacatttccattgctttctatgattctgagttccagtc 320
Query: 121 ttagccgagagttcctgaactttctagggggtggtggtgatgcttcctagcaggtgattt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ttagccgagagttcctgaactttctagggggcggtggtgatgcttcctagcaggtgattt 380
Query: 181 ttcagaaaggtgaacttggtccagagccaaacacctgagtacacagctccagggcctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagaaaggtgaacttggtccagagccaaacacctgagtacacagctccagggcctgtg 440
Query: 241 gcattctcgcatctcagagatcaagcccgaccccc--acacacaccttgtatgtccctca 298
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gcattctcgcagctcagagatcaagcccgacccccccacacacaccttgtatgtccctca 500
Query: 299 taggctctttgctcccttgtgtgcgtcttacttacctctgcctcaatttcttcccctcct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggctctttgctcccttgtgtgcgtcttacttacctctgcctcaatttcttcccctcct 560
Query: 359 ttcccacctatagaacaagtccattgagcaccggatcctgtgggatatgatatgctgcct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcccacctatagaacaagtccattgagcaccggatcctgtgggatatgatatgctgcct 620
Query: 419 ctggcaattaaatggcaggagtgacgcaaccctctgctttgtgtgtgtctgcggcagaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggcaattaaatggcaggagtgacgcaaccctctgctttgtgtgtgtctgcggcagaca 680
Query: 479 tcactaatcaactacctcttctcgctgagctggagcatgtcccagaatccattgccacac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcactaatcaactacctcttctcgctgagctggagcatgtcccagaatccattgccacac 740
Query: 539 aaaatcatgagtaccttgtagcaaatatttagagttgacaaatgaaac---gtttctcca 595
| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 agaatcatgagtaccttatagcaaatatttagagttgacaaatgaaacaacgtttctcca 800
Query: 596 acattcccctttccccttcctctgctttctccttactcccccactctagtgtgtacaatg 655
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acactcccctttccccttcctctgctttctccttactcccccactctagtgtgtacaatg 860
Query: 656 gtacttggtgaag 668
|||||||||||||
Sbjct: 861 gtacttggtgaag 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1070
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1060
Effective search space: 697480
Effective search space used: 697480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
