TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGTCTGCTCTTGAGATGCAGAGATACATATTAACCATTAAGTC
AGAGTTGTAATAAAATTAAATGACATATATGCTAGACTTATGTCAGATGG
GTGGTAGGTCTAGCCAGACTCAGAAAGGTCTTCCCACTTTCACCCCACCC
TGACATCACCATGACCACTGCTCAACTATGAAGTCTAACTTAGTTGTGTG
ACCTTCAGCAAATCATGTTCTGTTTGTTAAGCTGGCTCGAAAAGTGGGAG
GATCTCAGGTTATTCATAGGTGATTTTAAGAGTCCTCCAAGTAACACTTC
TTTTCTGGTTTTATTTATAGTGTAACTGCCCCATTATGCTGAAACCTAAA
AATAGTGAGTGACTCTCATGTCTTTGACAGGCCCCACAGTAGTATCGGTC
AGAGGACATGAAAGGAAATCAACTCATTTAAAGCATTCCTTCATGAGCCA
TATTCCTGCCTGTCTACCTAGCCAGCATTTCTCTATCATCTAATCAGTCA
TTTTTTTCTATGATCTATCATCTAACAATCTTTGTGTATCCCTTAAAATA
TTTGTATTCATTACTTTCAAATTGCATAAAATGTGTTTTGATGACATTCA
TTTCTGTTTCTCCCCACATCTCTATACTTCCCAAACTCCATGTCTATTTT
CTTTTAATAACACACTTAACCTACTTTGGTATACTCATGGATGG

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTATGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGAAACTCACACAATATGTGCTCACTGATAAG
TGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTTC
TAAACACATGAAACCCAAGAAGAATGAAGACTGAAGTGTGGACAGTA

Query= MSMg01no324_m04.b1 MSMg01no324_m04.b1 CHROMAT_FILE:
MSMg01no324_m04.b1 PHD_FILE: MSMg01no324_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:09 2005
         (699 letters)



>mm_chr5_26971289_26972386
          Length = 1098

 Score = 1210 bits (626), Expect = 0.0
 Identities = 678/696 (97%), Gaps = 3/696 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgtctgctcttgagatgcagagatacatattaaccattaagtcagagttgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattctatgtctgctcttgagatgcagagatacatattaaccattaagtcagagttgta 839

                                                                       
Query: 65  ataaaattaaatgacatatatgctagacttatgtcagatgggtggtaggtctagccagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ataaaattaaatgacatatatgctagacttatgtcagatgggtggtaggtctagccagac 779

                                                                       
Query: 125 tcagaaaggtcttcccactttcaccccaccctgacatcaccatgaccactgctcaactat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tcagaaaggtcttcccactttcaccccaccctgacatcaccatgaccactgctcaactat 719

                                                                       
Query: 185 gaagtctaacttagttgtgtgaccttcagcaaatcatgttctgtttgttaagctggctcg 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 718 gaagtctaacttagttgtgtgaccttcagcaaatcatgttctgtttgtcaagctggctcg 659

                                                                       
Query: 245 aaaagtgggaggatctcaggttattcataggtgattttaagagtcctccaagtaacactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 658 aaaagtgggaggatctcaggttattcataggtgattttaagagtcctccaagtaacattt 599

                                                                       
Query: 305 cttttctggttttatttatagtgtaactgccccattatgctgaaacctaaaaa-tagtga 363
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 598 cttttctggttttatttatagtgtaacttccctattatgctgaaacctaaaaaatagtga 539

                                                                       
Query: 364 gtgactctcatgtctttgacaggccccacagtagtatcggtcagaggacatgaaaggaaa 423
           |||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 538 gtgactctcatgcctttgacaggccccacaatagtatgggtcagaggacataaaaggaaa 479

                                                                       
Query: 424 tcaactcatttaaagcattccttcatgagccatattcctgcctgtctacctagccagcat 483
           ||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 478 tcaactcatttaaggcactccttcatgagccatattcctgcctgtctatctagccagcat 419

                                                                       
Query: 484 ttctctatcatctaatcagtcatttttttctatgatctatcatctaacaatctttgtgta 543
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 418 ttctctatcatctaatcagtcattttt--ctatgatctatcatctaacaatctttgtgta 361

                                                                       
Query: 544 tcccttaaaatatttgtattcattactttcaaattgcataaaatgtgttttgatgacatt 603
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 360 tcctttaaaatatttgtattcattactttcaaattgtataaaatgtgttttgatgacatt 301

                                                                       
Query: 604 catttctgtttctccccacatctctatacttcccaaactccatgtctattttcttttaat 663
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 300 catttctgtttttccccacatctctatacttccccaactccatgtctattttcttttaat 241

                                               
Query: 664 aacacacttaacctactttggtatactcatggatgg 699
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 aacacacttaacctactttggtatactcatggatgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1098
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1088
Effective search space:   749632
Effective search space used:   749632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)