Query= MSMg01no325_a20.b1 MSMg01no325_a20.b1 CHROMAT_FILE:
MSMg01no325_a20.b1 PHD_FILE: MSMg01no325_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:31 2005
(686 letters)
>mm_chr5_127043524_127044610
Length = 1087
Score = 1251 bits (647), Expect = 0.0
Identities = 676/688 (98%), Gaps = 6/688 (0%)
Strand = Plus / Plus
Query: 4 ggaattctccaacatatgcacgtacttaatttgcaattaaagagatgggcattgtaattt 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattctccaacatatgcatgtacttaatttgcaattaaagagatgggcattgtaattt 260
Query: 64 attatcagttgagtgttattaaaaaacacatacaagttattatgtgattaatatgaaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatcagttgagtgttattaaaaaacacatacaagttattatgtgattaatatgaaatt 320
Query: 124 attctttaaaaaaataaatctcatgtcattaatatcctcaccgtttcctgaagccttcat 183
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctttaaaaaaataaatctcgtgtcattaatatcctcaccgtttcctgaagccttcat 380
Query: 184 aatataggcaattaaggctttaatttaaattgttaacaactaacttgcaaatgaaagacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatataggcaattaaggctttaatttaaattgttaacaactaacttgcaaatgaaagacc 440
Query: 244 tggtaccaattacttaacagagctgatagattcaaaataaaggcatcgttcttcttggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtaccaattacttaacagagctgatagattcaaaataaaggcatcgttcttcttggaa 500
Query: 304 ggatgatggggagttttttattgtttctgtttgatgtatgtttgacttttctctcctttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgatggggagttttttattgtttctgtttgatgtatgtttgacttttctctcctttt 560
Query: 364 gttttcagtgcatcgccttaaagtggatgagtttggtacaggcttgtgatcccgacactt 423
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttcagtgcatcgttttaaagtggatgagtttggtacaggcttgtgatcccgacactt 620
Query: 424 gggaaggaggggcagaagaactggagttcaagatcattctcagggacactggagcacaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggaaggaggggcagaagaactggagttcaagatcattctcagggacactggagcacaag 680
Query: 484 atcaacctgggatgctgaggccgtcccccccccc---atccccagaaaaaagagaaggaa 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 atcaacctgggatgctgaggccgtcccccccccccccatccccagaaaaaagagaaggaa 740
Query: 541 gtattttagttagtggagaaaattctccaaggagaaagaatggaggcgacctgcgggttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtattttagttagtggagaaaattctccaaggagaaagaatggaggcgacctgcgggttc 800
Query: 601 agtgggagaacctctcanaaaaaaaaata--ttgaaaaaaaaaaagttagcctaagaaaa 658
||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||
Sbjct: 801 agtgggagaacctctcaaaaaaaaaaaaaaattgaaaaaaaaaa-gttagcctaagaaaa 859
Query: 659 atattaaatgttcagtttttctatagct 686
||||||||||||||||||||||||||||
Sbjct: 860 atattaaatgttcagtttttctatagct 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_a20.g1 MSMg01no325_a20.g1 CHROMAT_FILE:
MSMg01no325_a20.g1 PHD_FILE: MSMg01no325_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:31 2005
(546 letters)
>mm_chr5_127195820_127196765
Length = 946
Score = 549 bits (284), Expect = e-160
Identities = 310/320 (96%), Gaps = 3/320 (0%)
Strand = Plus / Minus
Query: 5 ttgcccatgtgatgggtgtgtagctgcatttcattaagtccctgatgactggtgacacga 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 ttgcccgtgtgatgggtgtgtagctgcatttcattaagtccctgatgactggtgacatga 261
Query: 65 agcacttcttcacaagctccttaccaagggtgtctgaaaaagtttgggggtgagttttgt 124
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 260 agcacttcttcacaagctccttaccaagggtgtttgaaaaagtttgggggtgagttctgt 201
Query: 125 agcactaaattgcccaagtctgctctatgttcctggtgggtgtgcacacatctctgcacc 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 200 agcactaaattgcccaagtctgctctatgctcctggtgggtgtgcacacatctctgcacc 141
Query: 185 cgcccatgtgttctggattcatggatgaaaggcacgcacacacattgattttttttt--- 241
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cgcccaagtgttctggattcatggatgaaaggcacgcacacacattgatttttttttttc 81
Query: 242 taatatgtcttaactagctcaatggctgggtcactcttgaacctccacgtggctagcaca 301
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 80 taatatgtcttaactagctcaatggctgggtcactcttgaacctccacatggctagcaca 21
Query: 302 ctctcccctccaatattctt 321
||||||||||||||||||||
Sbjct: 20 ctctcccctccaatattctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
