Query= MSMg01no325_j04.b1 MSMg01no325_j04.b1 CHROMAT_FILE:
MSMg01no325_j04.b1 PHD_FILE: MSMg01no325_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:06 2005
(374 letters)
>mm_chr5_134633995_134634765
Length = 771
Score = 611 bits (316), Expect = e-179
Identities = 330/336 (98%), Gaps = 3/336 (0%)
Strand = Plus / Minus
Query: 36 gtgttccaacccagcacgagctggggaatgcatttcagaacacgagctgagccagggatg 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gtgttccaacccagcacgagctggggaatgcatttcagaacacgagctgagccagggatg 712
Query: 96 tggtgctgcaggcctttcctgtctgcacttgggaggcagagatgatgaggatctctgtga 155
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 711 tggtgctgcaggcctttcctgtccgcacttgggaggcagagatgatgaggatctctgtga 652
Query: 156 gttcaaggcccgcctggtctccataatgagtttcaggacagctaaagctatatagagaac 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gttcaaggcccgcctggtctccataatgagtttcaggacagctaaagctatatagagaac 592
Query: 216 tcctgtctcaaaacaaagcaaaacccaaaaccaaccaacaaaaacatccccaatataaca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tcctgtctcaaaacaaagcaaaacccaaaaccaaccaacaaaaacatccccaatataaca 532
Query: 276 catgatcctggggggggcggtcattgcaattcaatcatagcaaggaccatatccatacag 335
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 catgagcctggggg---cggtcattgcaattcaatcatagcaaggaccatatccatacag 475
Query: 336 tggtttccagtgtcctgggtaacttggcttccctgc 371
|||||||||||||||||||| |||||||||||||||
Sbjct: 474 tggtttccagtgtcctgggtgacttggcttccctgc 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 771
Length adjustment: 9
Effective length of query: 365
Effective length of database: 762
Effective search space: 278130
Effective search space used: 278130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_j04.g1 MSMg01no325_j04.g1 CHROMAT_FILE:
MSMg01no325_j04.g1 PHD_FILE: MSMg01no325_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:06 2005
(477 letters)
>mm_chr5_134467294_134468170
Length = 877
Score = 833 bits (431), Expect = 0.0
Identities = 464/475 (97%)
Strand = Plus / Plus
Query: 1 acatgactggcagtttcgagaaagtgggtggggaatggggaactcagatgggagccagca 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 acatgactggcagtttcgagaaagtgggtggggaatggggaactcaaatgggagccagca 260
Query: 61 gattccactgagcctagaggcttggaatggtgtgtgtagagcccagctggagctcccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattccactgagcctagaggcttggaatggtgtgtgtagagcccagctggagctcccagc 320
Query: 121 tgggaggtgactgaggcaagcggccagaggcttaattgggagcttatctggccacacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggaggtgactgaggcaagcggccagaggcttaattgggagcttatctggccacacatg 380
Query: 181 gcccctggaacaaggattggatttagagatgaataccagtgagtcaattcagcaaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccctggaacaaggattggatttagagatgaataccagtgagtcaattcagcaaaataa 440
Query: 241 ttatccacagagcacacaagggaagtggtatccccatgagtctgggaagaatgatgtggg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ttatccacagagcacacaagggaagtggtatccctatgagtctgggaagaatgatgtggg 500
Query: 301 agccaggggcatgcatttggatctcatccctgtctctgtctctgcccccgccttttattg 360
||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||
Sbjct: 501 agccaggggcatgcatttgaatctcatccctgtctctgtctctgtctctgccttttattg 560
Query: 361 gatctatgaacttaaaagatcttcacaagccttagtctttataagctataaaatggtcat 420
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct: 561 gatctatgaacttaaaagatcttcacaagccttagtctttctgagctataaaatggttat 620
Query: 421 aatggcctttccagaaaaggggcataacaagtgcttatatgtttagagaggctgg 475
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 621 aatggcctttccagaaaaggggcgtaacaagtgcttataagtttagagaggctgg 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
