Query= MSMg01no325_m23.b1 MSMg01no325_m23.b1 CHROMAT_FILE:
MSMg01no325_m23.b1 PHD_FILE: MSMg01no325_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:23 2005
(694 letters)
>mm_chr5_36565635_36566724
Length = 1090
Score = 1259 bits (651), Expect = 0.0
Identities = 681/693 (98%), Gaps = 5/693 (0%)
Strand = Plus / Minus
Query: 3 ggaattc-catctttctgccccgtcgagaaccagtgttggccacctgggggtgctgtttt 61
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ggaattcacatctttcaggcccgtcgagaaccagtgttggccacctgggggtgctgtttt 997
Query: 62 accccagtgaatgtgcttggtgcagagaaaccagttcagccttgcatctctgcccaggac 121
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 accccagtgaatgtggttggtgcagagaaaccagttcagccttgcatctctgcccaggac 937
Query: 122 tcagaatgtagatgatatgctgatcaggatgccaggctctgaggtgggaccttaggctgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tcagaatgtagatgatatgctgatcaggatgccaggctctgaggtgggaccttaggctgc 877
Query: 182 gttctaaacaagtactaggaaattccaataccgcttgtccataagacaacaggcctgttg 241
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 876 gttctaaacaagtgctaggaaattccgataccgcttgtccataagacaacaggcctgttg 817
Query: 242 cttccagacaacctgggagtctctgcagtgctaagcagcccactggtagtatctggtcaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 cttccagacaacctgggagtctctgcagtgctaagcagcccactggtagtatctggtcaa 757
Query: 302 gctggactttacccatctgggtgtctgtaggtgtctgtgtgtgctggctcctgtctggca 361
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gctggactttaccc----gggtgtctgtaggtgtctgtgtgtgctggctcctgtctggca 701
Query: 362 tgcacttagcattgcccctcagttctgactttatcctcatctagttagtgcagcttccct 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgcacttagcattgcccctcagtcctgactttatcctcatctagttagtgcagcttccct 641
Query: 422 aaggaggccactcagtgtacagagccctcccccacccccggcaaggttctttgttacctc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaggaggccactcagtgtacagagccctcccccacccccggcaaggttctttgttacctc 581
Query: 482 tctcatggaagtttctgtttccttgcttatactgcttctgctattactagaacacaagtc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tctcatggaagtttctgtttccttgcttatactgcttctgctattactagaacacaagtc 521
Query: 542 atgagcatggagacctctcaaggccatacagttgatcacaggatgccataaccaagtact 601
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atgagcacggagacctctcaaggccatacagttgatcacaggatgccataaccaagtact 461
Query: 602 gactggtgctcggaatgcacgttggccttgaatgcatgggtcggtggacagatgggtgaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gactggtgctcggaatgcacgttggccttgaatgcatgggtcggtggacagatgggtgaa 401
Query: 662 caaatgaatggagatgatggatagatggtatat 694
|||||||||||||||||||||||||||||||||
Sbjct: 400 caaatgaatggagatgatggatagatggtatat 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1090
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1080
Effective search space: 738720
Effective search space used: 738720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_m23.g1 MSMg01no325_m23.g1 CHROMAT_FILE:
MSMg01no325_m23.g1 PHD_FILE: MSMg01no325_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:23 2005
(659 letters)
>mm_chr5_36397078_36398135
Length = 1058
Score = 1131 bits (585), Expect = 0.0
Identities = 632/659 (95%), Gaps = 20/659 (3%)
Strand = Plus / Plus
Query: 1 ttgtcagtgacagagggtgaaaccctaagtgtggcaggcggcgtgtgtgtgacagatatc 60
||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||
Sbjct: 201 ttgtcagtgacagagggtgaaaccc-aagtgtggcaggcagcatgtgtgtgacagatatc 259
Query: 61 tgtggagagggtagatagcgccccctcatgtcagacctgtccatgacacccttccatcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 260 tgtggagagggtagatagcgccccctcatgtcagacctgtccatgacacccttacatcta 319
Query: 121 tcactgctcaccctgacctggagcaacagccctgtctctgagtctctgagggcttcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcactgctcaccctgacctggagcaacagccctgtctctgagtctctgagggcttcagtg 379
Query: 181 ctccagtgttgccagaggagtgctgcaagatgccactgtccctctgcagccccagctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctccagtgttgccagaggagtgctgcaagatgccactgtccctctgcagccccagctggg 439
Query: 241 agggaacactgacaaatgggctctcttcgcaaacaaacgattacattcatcatttcgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agggaacactgacaaatgggctctcttcgcaaacaaacgattacattcatcatttcgctg 499
Query: 301 gggataatggctccacactgccgctgacagctggagacacattgaggccccctctacctg 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 gggataatggctccacactgccgctgacagctggagacacattgaggttccctctacctg 559
Query: 361 ggaggtcccctcccactcgaagggacggagcccattgtctgccaagggctactctctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaggtcccctcccactcgaagggacggagcccattgtctgccaagggctactctctgag 619
Query: 421 ccagactcaccatctaacagtagaaacaccagtgggcctcctatggctctccccactggc 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 ccagactcaccatctaacagtagaagcaccagtgggcctcctatggctctccccactggc 679
Query: 481 ctgggggccccaagagcagaggtgagggaagatcttggtagacagtgtggctggttctac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgggggccccaagagcagaggtgagggaagatcttggtagacagtgtggctggttctac 739
Query: 541 tcagatctggtctgtcttgaaaggttgatgtgggagggttt-------------cctaac 587
|||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 740 tcagatctggcctgtcttgaaaggttgatgtgggagggtttggtgggagggtttcctaac 799
Query: 588 ctgcacatgggctaaataatacttccacccctgcccctggtgtccaaaagagaaaagag 646
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctgcac------taaataatacttccacccctgcccctggtgtccaaaagagaaaagag 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
