Query= MSMg01no327_e16.b1 MSMg01no327_e16.b1 CHROMAT_FILE:
MSMg01no327_e16.b1 PHD_FILE: MSMg01no327_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:10 2005
(352 letters)
>mm_chr5_112965522_112966273
Length = 752
Score = 640 bits (331), Expect = 0.0
Identities = 343/347 (98%)
Strand = Plus / Plus
Query: 1 gagcagaagggcttgtggtgcctctggtacgataaagctgaaagactgtgggcagactct 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gagcagaagggcttgtggtgcctctggtacgataaagttgaaagactgtgggcagactct 260
Query: 61 ctgtgtgttggctatacatggattcatctagctctggaggaagatgtttaggtggcttgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgtgttggctatacatggattcatctagctctggaggaagatgtttaggtggcttgc 320
Query: 121 atgctccatctcattctacataatgagcacccatcaggaaggagcctgaaaaacagatgt 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 atgctccatctcattctacataatgagcacccatcagaaaggagcctgaaaaacagatgt 380
Query: 181 agcatcagtcccttcttgcttggagagtggacaccttgagctggtctagatgacaactga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcatcagtcccttcttgcttggagagtggacaccttgagctggtctagatgacaactga 440
Query: 241 gccatgtgacgaatacttctgggcacccactaaaacccattttcttttcctccagggctc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccatgtgacgaagacttctgggcacccactaaaacccattttcttttcctccagggctc 500
Query: 301 aaagctttactacatagccagccttccttgcagccagtctcccttgc 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagctttactacatagccagccttccttgcagccagtctcccttgc 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space: 254849
Effective search space used: 254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no327_e16.g1 MSMg01no327_e16.g1 CHROMAT_FILE:
MSMg01no327_e16.g1 PHD_FILE: MSMg01no327_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:10 2005
(544 letters)
>mm_chr5_113138014_113138957
Length = 944
Score = 1000 bits (517), Expect = 0.0
Identities = 537/551 (97%), Gaps = 14/551 (2%)
Strand = Plus / Minus
Query: 1 aacctatgtatgatttctgagaaatatttgtagctggatttaaagtgcccaagctgaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aacctatgtatgatttctgagaaatatttgtagctggatttaaagtgcccaagctgaatt 685
Query: 61 gtttttaaaaaagaaatctccattagaaaagagttggataacagaacaaatacagttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtttttaaaaaagaaatctccattagaaaagagttggataacagaacaaatacagttatt 625
Query: 121 atggtaacgaaggcagtattagattttgtctgaaaaatcagaagaaatgaaaggtaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggtaacgaaggcagtattagattttgtctgaaaaatcagaagaaatgaaaggtaagac 565
Query: 181 tgaatgtgtatgagaaaaaaggggttaatttctccattaccatgaattaaacaaaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaatgtgtatgagaaaaaaggggttaatttctccattaccatgaattaaacaaaatgat 505
Query: 241 tcacctcaggatctttttacccatgggtgtgtgtgaccagtcttcctaaatcactcaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcacctcaggatctttttacccatgggtgtgtgtgaccagtcttcctaaatcactcaata 445
Query: 301 ttttaaagaataagcttagacaaaagaccacgccccctgcccactcccccccc-----cc 355
||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 444 ttttaaagaataagcttagacaaaagaccacgccccctgcccact-------ctttaacc 392
Query: 356 --agctctctagcaaagtggtcagccctcttccatttggtgtggcccccctcccagacct 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttagctctctagcaaagtggtcagccctcttccatttggtgtggcccccctcccagacct 332
Query: 414 ctctgcatatttataaacatctgcactgctcacagcaggtagcacccataggagctttta 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctctgcatatttataaacatctgcactgctcacagcaggtagcacccataggagctttta 272
Query: 474 gaaggcatagctgatgtactgtgtggtgtgtgctctttataaatccatatggtatctttc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaggcatagctgatgtactgtgtggtgtgtgctctttataaatccatatggtatctttc 212
Query: 534 catccacagtg 544
|||||||||||
Sbjct: 211 catccacagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
