BAC Information

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BAC

Clone NameMSMg01-328H22
Chromosome5 (Build37)
Map Location 96,441,079 - 96,639,718
singlet/doubletdoublet
Overlap geneCnot6l, LOC100040559, Mrpl1
Upstream geneLOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328H22.T7 (MSMg01no328_h22.b1)MSMg01-328H22.TJ (MSMg01no328_h22.g1)
ACCAG445578AG445579
length726719
length of high quality
(start - end)		603 (49 - 651)564 (80 - 643)
definitionCHROMAT_FILE: MSMg01no328_h22.b1 PHD_FILE: MSMg01no328_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:40 2005CHROMAT_FILE: MSMg01no328_h22.g1 PHD_FILE: MSMg01no328_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,441,079 - 96,441,676)(96,639,155 - 96,639,718)
sequence
NAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCC
GCGGAATTCTGCTCACCTCCCTCTGACCTTCTCATCACTCCTAATCAGCC
CATATGTTAATCTTTAAATAATTGAATTAAATTGGACAAAGGGTTTGTAT
AACTACTTCCAGAACCAGAGATCTACAACTGGAGAGTAAGCACAGAGACC
GATGTTCAACTCTGACATTTAAAGGGCAATGCAAGTCAAAAGTATAACCA
GGTACATACAGCCAACCACTCGGATGGATACATTATATATGTATAGATAA
AGACAGACAAAATAACAAGTGTTGACAAAGACACAAAGCAGCAGTTGACA
AAGACACTATCAGTGGCTACAATGTGCATGGGTGGTAGGCAGGTATATCA
ACAGAACGCAACTTTGAAACCGTCTGGCACCTCCTAAAAGGAAGGACCCT
GAGTGATGTTCCTTACACTGACCCCAAAGTTGCCCTCTCAGGTAGACTCC
AAAGAGAACCGAAAATAGATGTTCAAAACAAAACCCACATTCCAAGAGCG
CCTACCTCAAGGAGATTATGTCCACGTGGCACTATAATAAGCACAATGTG
AGGTTTTGTTATTTCATCATAAAAGTATCCAAGCACTGATGCTATAACAT
GGATAAACACATAAAGCATTATGCTAAGGTAAAGAAGCCAGGCCAAACAA
AGGCAGTGTATTATATAATTCCATTN

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTAGCCATGTCTAACGTG
CTCAGACATGGCTATACAAAACACTACAGAATTAGTCTCCAAATGATAAA
CACGATAGCCTCTGTAAATTTACTAACTGGAATCGCCTTTATTCATAAAC
ACGCCAAGGTTCAGATATTTACAGATGTAAATCACTTCATATACCACCTT
TCCCTTCAGGGCTCGCTTATCAAACTGAACACGCCCGCTATCCCACACAC
ACAACAGAATCCTGCCTTGTACTCCTCACCCCTGACTATAAGTACTGCCA
ATGTATTTCCGCTCCCATTTCATCCTCAAAATGACCTGCTCCAAGAGAGA
ACCCTTGCGTTAAGGGTCGCTTTTAACCACTGATGACCCTCTGGGCTGTG
GAGCCCAGAAGACCACGGAAGCATTTCGAGGACCGAGAAGCTGACCGGTG
CCTACGAGATTCTGCCATGGATTCCGCTGCAACAGGAAACTTGGCTCTAG
ATTTACTTTCCACGCAAGAACACTGTTCCTCTTACCTCTACAGAGGCACC
TTACGGCCGCCGCCATGTTGACTGTTCCGGATTGTGCTGACGAAGTGGGT
CCCGGTTTTCAACTGCACAAAAATGCGAAAAAGGGTTCCGCGCGGAAACT
GCAAAAGGGGTAAGAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_h22.b1 MSMg01no328_h22.b1 CHROMAT_FILE:
MSMg01no328_h22.b1 PHD_FILE: MSMg01no328_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:40 2005
         (603 letters)



>mm_chr5_96440874_96441876
          Length = 1003

 Score = 1118 bits (578), Expect = 0.0
 Identities = 593/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgctcacctccctctgaccttctcatcactcctaatcagcccatatgttaatct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgctcacctccctctgaccttctcatcactcctaatcagcccatatgttaatct 265

                                                                       
Query: 66  ttaaataattgaattaaattggacaaagggtttgtataactacttccagaaccagagatc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttaaataattgaattaaattggacaaagggtttgtataactacttccagaaccagagatc 325

                                                                       
Query: 126 tacaactggagagtaagcacagagaccgatgttcaactctgacatttaaagggcaatgca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tacaactggagagtaagcacagagaccgatgttcaactctgacatttaaagggcaatgca 385

                                                                       
Query: 186 agtcaaaagtataaccaggtacatacagccaaccactcggatggatacattatatatgta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agtcaaaagtataaccaggtacatacagccaaccactcggatggatacattatatatgta 445

                                                                       
Query: 246 tagataaagacagacaaaataacaagtgttgacaaagacacaaagcagcagttgacaaag 305
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 tagataaagacagacaaaataacaagtgttgacaaagacacaaagcagcaattgacaaag 505

                                                                       
Query: 306 acactatcagtggctacaatgtgcatgggtggtaggcaggtatatcaacagaacgcaact 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acactatcagtggctacaatgtgcatgggtggtaggcaggtatatcaacagaacgcaact 565

                                                                       
Query: 366 ttgaaaccgtctggcacctcctaaaaggaaggaccctgagtgatgttccttacactgacc 425
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttgaaaccgtctggcatctcctaaaaggaaggaccctgagtgatgttccttacactgacc 625

                                                                       
Query: 426 ccaaagttgccctctcaggtagactccaaagagaaccgaaaatagatgttcaaaacaaaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccaaagttgccctctcaggtagactccaaagagaaccgaaaatagatgttcaaaacaaaa 685

                                                                       
Query: 486 cccacattccaagagcgcctacctcaaggagattatgtccacgtggcactataataagca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cccacattccaagagcgcctacctcaaggagattatgtccacgtggcactataataagca 745

                                                                     
Query: 546 caatgtgaggttttgttatttcatcataaaagtatccaagcactgatgctataacatg 603
           |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 746 caatgtgaggttttgttatttcatcataaacgtaaccaagcactgatgctacaacatg 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no328_h22.g1 MSMg01no328_h22.g1 CHROMAT_FILE:
MSMg01no328_h22.g1 PHD_FILE: MSMg01no328_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:40 2005
         (564 letters)



>mm_chr5_96638955_96639918
          Length = 964

 Score = 1044 bits (540), Expect = 0.0
 Identities = 558/564 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattagccatgtctaacgtgctcagacatggctatacaaaacactacagaattagtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctattagccatgtctaacgtgctcagacatggctatacaaaacactacagaattagtctc 705

                                                                       
Query: 61  caaatgataaacacgatagcctctgtaaatttactaactggaatcgcctttattcataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 caaatgataaacacgatagcctctgtaaatttactaactggaatcgcctttattcataaa 645

                                                                       
Query: 121 cacgccaaggttcagatatttacagatgtaaatcacttcatataccacctttcccttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cacgccaaggttcagatatttacagatgtaaatcacttcatataccacctttcccttcag 585

                                                                       
Query: 181 ggctcgcttatcaaactgaacacgcccgctatcccacacacacaacagaatcctgccttg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 584 ggctcgcttatcaaactgaacacgcccgctatcccacacacacaacagaatcttgccttg 525

                                                                       
Query: 241 tactcctcacccctgactataagtactgccaatgtatttccgctcccatttcatcctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tactcctcacccctgactataagtactgccaatgtatttccgctcccatttcatcctcaa 465

                                                                       
Query: 301 aatgacctgctccaagagagaacccttgcgttaagggtcgcttttaaccactgatgaccc 360
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 464 aatgacctgctccaagagagaacccttgcgttaagtgtcgcttttaagcactgatgaccc 405

                                                                       
Query: 361 tctgggctgtggagcccagaagaccacggaagcatttcgaggaccgagaagctgaccggt 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 404 tctgggctgtggagcccagaagatcacggaagcatttcgaggaccgagaagctgaccggt 345

                                                                       
Query: 421 gcctacgagattctgccatggattccgctgcaacaggaaacttggctctagatttacttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gcctacgagattctgccatggattccgctgcaacaggaaacttggctctagatttacttt 285

                                                                       
Query: 481 ccacgcaagaacactgttcctcttacctctacagaggcaccttacggccgccgccatgtt 540
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 284 ccacgcaagaacactgctcctcttacctctacggaggcaccttacggccgccgccatgtt 225

                                   
Query: 541 gactgttccggattgtgctgacga 564
           ||||||||||||||||||||||||
Sbjct: 224 gactgttccggattgtgctgacga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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