BAC Information

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BAC

Clone NameMSMg01-328P10
Chromosome5 (Build37)
Map Location 13,584,545 - 13,731,738
singlet/doubletdoublet
Overlap geneSema3a
Upstream geneSema3d, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328P10.T7 (MSMg01no328_p10.b1)MSMg01-328P10.TJ (MSMg01no328_p10.g1)
ACCAG445920AG445921
length732731
length of high quality
(start - end)		635 (48 - 682)514 (79 - 592)
definitionCHROMAT_FILE: MSMg01no328_p10.b1 PHD_FILE: MSMg01no328_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:15 2005CHROMAT_FILE: MSMg01no328_p10.g1 PHD_FILE: MSMg01no328_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,584,545 - 13,585,175)(13,731,225 - 13,731,738)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAGACTGATACATCAAAGTTAGACAATAGCATATTTTAAAAA
GATTACACATAGATATATAATCGCAATGTGTTGACATCAGACTCCTAAGT
CCTTGATAGAATTGTGGGAGCAATGAGGAAATGCAGACACAATGAGGAAA
ATCATCAGTCACGTGGATTCTAATATTCAAACTTACAACCACACTGGAGA
TCAGAACAATAGTTATGCTTATTGAAGAAATGGGTTGTTGTCTCTAAAAT
GAAGTCTAGAGCTCCTCAGGGTTAGATTTTTACTGACTGATTCCTAGTAG
AAAACAAGGCAGAATGTCTATTCATGATGGTTATGAGTCCCTTGGTTGCA
GTGGCTAGAGTTCAGTGTATTTGCTTCTCAGTTTTGTCACCTTTCAGTCC
CCGTATCCAGCCACACAGGCTGCAGATGCATATCTTCCTCTCTTGCCTAC
GGGATTCAGTGCAGATTTGATTCTTCATTCACATCAGAGATTTAGAATAA
TATCTCTTGAATGTAATTCTTTTAGGCGCACAAGACGACAAGATATAAGG
AATGGAGACCCACTGACTCACTGCTCTGACTTGCAGCACCATGGTAAGCC
ACTCTTTACACTTCCAGTGCTAAAGCCTTAGGTGTGCTCACATTGTTCCA
AGACCAGTTAGGAGGAAATGTGGTCTGGAATG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATATTTGAGCCTGGGGAGCA
AGTCTCATTCAAATATCCACACTATAGCAAGAGAGAAACAGAGATAGGAT
GTAGAAGGGAAAGGAGGAGAGGGATAGAATGAATAGGTAGCTAACAGAAG
TGGGGAATGCAAACCTAAGAAACACAAAAATGGATGACTCTTCATATTGC
ATGTAAAAACTCACTCTGTATGAGTTATTAACTTTTCTGATCTCAATGAA
ACAAATATCTGCCTAATAATATAGCAAGTGTGCTACTTACACATAAGCAG
CAAGAGAAGAGGGGAATGGGGATTAATTATCACCTAGTACCCTACGCTCT
GAAAAGTTGCTGGGGATAGCTAGAACTTTACCTTTGCATTTTCTGTTTGC
CCTGAAGCTCAGTGAACTCAGAGGCTGCCCACTCTGGTGTGTGTAAGAAT
AACTGGAAGTATGCTAAAGATCTGAAAGAAATTTAGCTCCAAAGGAAAGA
ATAGAGCCCACTTTCTTTCTCAGAATGCTGCATTTTCTACATCCTTCTTA
GTCTACAATTATTCTTGAGTGCTACTAGAGAGAAAGACAGATGACGAAAG
TAGGTTCATTGACCTATAGATATACGATAACTTTCTCTTGTTCTTACAAC
AGAGTAGCAAGATCGAACCCGGTTCCTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_p10.b1 MSMg01no328_p10.b1 CHROMAT_FILE:
MSMg01no328_p10.b1 PHD_FILE: MSMg01no328_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:15 2005
         (635 letters)



>mm_chr5_13584341_13585375
          Length = 1035

 Score = 1181 bits (611), Expect = 0.0
 Identities = 626/631 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagactgatacatcaaagttagacaatagcatattttaaaaagattacacata 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagactaatacatcaaagttagacaatagcatattttaaaaagattacacata 264

                                                                       
Query: 65  gatatataatcgcaatgtgttgacatcagactcctaagtccttgatagaattgtgggagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatatataatcgcaatgtgttgacatcagactcctaagtccttgatagaattgtgggagc 324

                                                                       
Query: 125 aatgaggaaatgcagacacaatgaggaaaatcatcagtcacgtggattctaatattcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgaggaaatgcagacacaatgaggaaaatcatcagtcacgtggattctaatattcaaa 384

                                                                       
Query: 185 cttacaaccacactggagatcagaacaatagttatgcttattgaagaaatgggttgttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttacaaccacactggagatcagaacaatagttatgcttattgaagaaatgggttgttgt 444

                                                                       
Query: 245 ctctaaaatgaagtctagagctcctcagggttagatttttactgactgattcctagtaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctaaaatgaagtctagagctcctcagggttagatttttactgactgattcctagtaga 504

                                                                       
Query: 305 aaacaaggcagaatgtctattcatgatggttatgagtcccttggttgcagtggctagagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacaaggcagaatgtctattcatgatggttatgagtcccttggttgcagtggctagagt 564

                                                                       
Query: 365 tcagtgtatttgcttctcagttttgtcacctttcagtccccgtatccagccacacaggct 424
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagtgtatttgtttcccagttttgtcacctttcagtccccgtatccagccacacaggct 624

                                                                       
Query: 425 gcagatgcatatcttcctctcttgcctacgggattcagtgcagatttgattcttcattca 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 gcagatgcatatcttcctctcttgcctatgggattcagtgcagatttgattcttcattca 684

                                                                       
Query: 485 catcagagatttagaataatatctcttgaatgtaattcttttaggcgcacaagacgacaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catcagagatttagaataatatctcttgaatgtaattcttttaggcgcacaagacgacaa 744

                                                                       
Query: 545 gatataaggaatggagacccactgactcactgctctgacttgcagcaccatggtaagcca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 gatataaggaatggagacccactgactcactgctctgacttgcagcaccatggtaagtca 804

                                          
Query: 605 ctctttacacttccagtgctaaagccttagg 635
           |||||||||||||||||||||||||||||||
Sbjct: 805 ctctttacacttccagtgctaaagccttagg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no328_p10.g1 MSMg01no328_p10.g1 CHROMAT_FILE:
MSMg01no328_p10.g1 PHD_FILE: MSMg01no328_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:16 2005
         (514 letters)



>mm_chr5_13731025_13731938
          Length = 914

 Score =  940 bits (486), Expect = 0.0
 Identities = 507/514 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatttgagcctggggagcaagtctcattcaaatatccacactatagcaagagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aaatatttgagcctggggagcaagtctcattcaaatatccacactatagcaagagagaaa 655

                                                                       
Query: 61  cagagataggatgtagaagggaaaggaggagagggatagaatgaataggtagctaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cagagataggatgtagaagggaaaggaggagagggatagaatgaataggtagctaacaga 595

                                                                       
Query: 121 agtggggaatgcaaacctaagaaacacaaaaatggatgactcttcatattgcatgtaaaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agtgggtaatgcaaacctaagaaacacaaaaatggatgactcttcatattgcatgtaaaa 535

                                                                       
Query: 181 actcactctgtatgagttattaacttttctgatctcaatgaaacaaatatctgcctaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 actcactctgtatgagttattaacttttctgatctcaatgaaacaaatatctgcctaata 475

                                                                       
Query: 241 atatagcaagtgtgctacttacacataagcagcaagagaagaggggaatggggattaatt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 474 atatagcaagtgtgctacttacacataagcagcaagagaggaggggaatggggattaatt 415

                                                                       
Query: 301 atcacctagtaccctacgctctgaaaagttgctggggatagctagaactttacctttgca 360
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 414 atcacctagtaccctacgctctgaaaagttgctggagatagctagaattttacctttgca 355

                                                                       
Query: 361 ttttctgtttgccctgaagctcagtgaactcagaggctgcccactctggtgtgtgtaaga 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttttctgtttgcgctgaagctcagtgaactcagaggctgcccactctggtgtgtgtaaga 295

                                                                       
Query: 421 ataactggaagtatgctaaagatctgaaagaaatttagctccaaaggaaagaatagagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ataactggaagtatgctaaagatctgaaagaaatttagctccaaaggaaagaatagagcc 235

                                             
Query: 481 cactttctttctcagaatgctgcattttctacat 514
           ||  ||||||||||||||||||||||||||||||
Sbjct: 234 caggttctttctcagaatgctgcattttctacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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