BAC Information

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BAC

Clone NameMSMg01-329C09
Chromosome5 (Build37)
Map Location 38,805,168 - 38,805,414
singlet/doubletsinglet
Overlap geneSlc2a9
Upstream geneEvc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik
Downstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329C09.T7 (MSMg01no329_c09.b1)MSMg01-329C09.TJ (MSMg01no329_c09.g1)
ACCAG446058AG446059
length778750
length of high quality
(start - end)
247 (75 - 321)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no329_c09.b1 PHD_FILE: MSMg01no329_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:30 2005CHROMAT_FILE: MSMg01no329_c09.g1 PHD_FILE: MSMg01no329_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCG
GAATTCTATTTCCTTATCACTGAGAAAGTATTTGGACACAGCTAGTGTTA
ACTATCAACTTGACAATGTAGAATCAGCTAGGAAATAAATTCCTAGGCAG
ACTTGTGGGAGACTATATAGGTCAAGACCGACCTTTGAGAATGTCTTAGG
TAATGTATCTTGATTACATTAATTAGTGTAGGAAAACTATCTTAACCGCA
GGCAGTGCTGTTTCCTCAGAGTGGGTCTCTAGGCTTGGCGTCCTGGATTT
GTCAAAACAGATAACAGCTGATTTTTAGGCAAGCACACATGCATTAATCT
GCTTGAGTATAGATGTATATGACCCGCTTCATCAGCCAAGCTCCTGCTTC
TGCCATTTCCTGCTAGCCCGAACTGTGAGTCAAATAAGATCTCTCCTCTC
CCCCCCTAAAATTGCTCTCGTCTGAATCACTTAGTATAGTCCCACTATTT
TAACACTATCTCATAGAAGTTGCTTCCTCCCATATTATTACTTCAGTAAC
TCATCAGTGTTGCCCTCCCTGGGCTCTCGCTTGGGCATAATCCCCAGTTG
ATACTTTGGGCTTCCTGGGGTGATCTGTACAGTGCACCCTGAGGTTTCTG
GCTTAGTAGGCAGTACTCGTGTTTAATTTTTTTGCTCCAATGTCGGTTTT
GGAATATTTCCTCGCATCTCTTTTGAGTTTTTTCTTTAGGACTCCCCTTG
GTCCTTGTAGGTTCCTCTGTTATGGATG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTCTGCCCTTGTATAGCCGCTAATT
CATTCATATCTCCATAGGTGTGGCTCTAAGTGGACATGATGGTCATAATA
TCATGATGGTCACATGCTCCTGCTGGGATGGGAGAGAGCTGGGTTCTTCT
GCAGTTCTACCTCCGTCCCTGCGTGACCTGGACAATCACATGACAGCAGT
ATATATGTGTCTGTCCTCAAGAAGGAATTAGAATGAGCACCACAGAGACA
GAACTGGTAAACTCCCAGAGGGCCTCTCTGAGCTGGGACACATGTGTAGA
TTGCTCCTGATGAATGACAGCCACAGGAGGATTGAGCAAGAGCACTGGCC
TCCTCCCTGGTCTGCGCGCCCCCGACTCAGCCATACTTGTTCATATCTGT
AGCATCAACCTAACTGCACACAGTTCTCTGTTATCCTCACCTGTTTCATA
TTATTCATCTCCCCACCCTTTCTGATGTCTACTCTTCTTAGAAGTTCTTC
CCAATGTCTCCTGTTATTCCCGTCTTGGAACTTCTGGTTCTCCCTTCACC
TGATTCTTTTTCATAGTGTTGATCCCCTGTAACCCTTCTTGCTTCCTCAT
GGTATTCCTTACGCGTTTTCCTCCCTTTGCCCTCTGTTACTCTTCCCTGG
TACTTCGATATTCATTTTCTTCTTCTACCCTGGTCCTTACTTAATTTCCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_c09.g1 MSMg01no329_c09.g1 CHROMAT_FILE:
MSMg01no329_c09.g1 PHD_FILE: MSMg01no329_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:30 2005
         (247 letters)



>mm_chr5_38804968_38805614
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctgcccttgtatagccgctaattcattcatatctccataggtgtggctctaagtgga 60
           |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccgcccttgtatagctgctaattcattcatatctccataggtgtggctctaagtgga 260

                                                                       
Query: 61  catgatggtcataatatcatgatggtcacatgctcctgctgggatgggagagagctgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgatggtcataatatcatgatggtcacatgctcctgctgggatgggagagagctgggt 320

                                                                       
Query: 121 tcttctgcagttctacctccgtccctgcgtgacctggacaatcacatgacagcagtatat 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tcttctgcagttctacctccgtccctgcgtgacctggacagtcacatgacagcagtatat 380

                                                                       
Query: 181 atgtgtctgtcctcaagaaggaattagaatgagcaccacagagacagaactggtaaactc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtggctgtcctcaagaaggaattagaatgagcaccacagagacagaactggtaaactc 440

                  
Query: 241 ccagagg 247
           |||||||
Sbjct: 441 ccagagg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)