BAC Information

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BAC

Clone NameMSMg01-329P05
Chromosome5 (Build37)
Map Location 53,061,184 - 53,061,553
singlet/doubletsinglet
Overlap genenone
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e
Downstream genePi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329P05.T7 (MSMg01no329_p05.b1)MSMg01-329P05.TJ (MSMg01no329_p05.g1)
ACCAG446634AG446635
length727866
length of high quality
(start - end)
371 (45 - 415)54 (128 - 181)
definitionCHROMAT_FILE: MSMg01no329_p05.b1 PHD_FILE: MSMg01no329_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:35 2005CHROMAT_FILE: MSMg01no329_p05.g1 PHD_FILE: MSMg01no329_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTACTTCAAGAGGATGCGCGGAATTCTGTAGATCTCCCCTTAGTAGA
GAAAACTCTAGATCTCAGGTAAGATATGCATAAGGTTCCTCTTCCCATAG
TATGATGGTGGGTTGAGTTATTTCAGATTAATGCATAATTTAAAATGAAA
AGAGTAACTATCATGAGATAAATTTGCCGCAGGAGCAGGGCTCTATCCTT
TCCTAAGGTTGTCAGGCAGTAGGAAATGCTGAAATATATCAAGGTATGTA
TGGATGTAAGGTTCTGGAATCTGACACAGTCTGGGGAAGACTCAAACAAT
ATGACTGGAGCAGATCATAAATTGTCATTTCCTGAGAAGCCCACACAATG
ACTCTTCTGCCTTCTCTGCCCTCTCTTGAAGTACTAGTGTTCTTGATTAC
AAGAGGGTTTACCTAGCCCAGTCCAACTCCCCTTTCCTCTGGCCGGAAAC
CCGTTAATCTTGCCCACTCTCTCATATATACTCAAGGCTTCCAACTTCTT
CCCATGTGCTTGCGTCTGTTAGTTAACGCCATTGGAGGTCCCCCTATATT
TCTCCGCGCACGCTCGGAATTTCAATGCGCCCCTCTTATTCCCGTTCCTA
TTTCCTTATTCCCTCTCCCCGCTCCCCCCCTTTCCTTCCCCCTTCCTTTC
CTTTTTCTTTTTCCCCCCTTCCCTCTTTCCCTTTCACCCACTTCCACACC
TTTTTCCCCGCCCCCTCCTTTCTCTTT
TTTTTCCTTTCTCTTTTTTTTTTTTCTCCTTCCTCCTCCTTCTTCTTCCT
CGCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGATGATGACTGTGTGAAAAGGGGCGTTC
CAACACGGATGCCATTCTCTTTTATATGGGATCCGTGATGGACATATGTT
GTTTGGTGATGGCCACAAAGCATCCTGCATTTTTTTCCCTAAGAAATGGT
CATGAAGATGATTATTCTCTACCCTGCTGTAAAGTTGTCATCTTTCTTTC
TGTGTTCTGACACGTTCAGCAGTAGGCATATGATTTAACCTTGCTCACTC
TACACTTTCTGTTCTGTATTTTGTCATTCTTCGTCCCGTCCATGTCCTCT
TTTGCTATTCGTTATTCCCCCTGCTCTGTCCATACCCTATGATGATATGG
ATGTTATCGTCGTACTCCCCTGTTCCAATATTCCTTCTTTATGATATTTC
CCTATACCTACCGTTACATCACCGTTAACATTTCTACTATCTCCTCCACC
TATTTCCTTTTCCTTCTTTTACCCTTTCCCTTTTTTTATTCTTTTCCCGC
CTTTCCACCTTTTCTTTTTCCCTTTCTCCCTTCCGTTTCCTCCTTTTTTC
CGTTTTATTCTCCAGCCTCCATATAATCTTTTTTGTCCTTTTATATTTCC
CTCCTCTATTTTTCTTTAATTTCTCTATACCCCCCCCATTTATATCTTTA
CCCCTCCCCTTTTTTCAACAGCTATTATACTCAACTCCGTTTTCTCTCCT
TCTTAATTTTTTTCTCGCTCATTCTTTTCCCCCTTATTATATATCCCTCA
TCTATCTATTACCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_p05.b1 MSMg01no329_p05.b1 CHROMAT_FILE:
MSMg01no329_p05.b1 PHD_FILE: MSMg01no329_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:35 2005
         (371 letters)



>mm_chr5_53060984_53061753
          Length = 770

 Score =  650 bits (336), Expect = 0.0
 Identities = 363/372 (97%), Gaps = 3/372 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtagagaaaactctagatctcaggtaagatatgcataaggttcctcttcccatagtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 570 agtagagaaaactctagatctcaggtaagatatgcataaggttcctcttcccataatatg 511

                                                                       
Query: 61  atggtgggttgagttatttcagattaatgcataatttaaaatgaaaagagtaactatcat 120
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 510 atggtgggttgagttattgcagattattgcataatttaaaatgaaaagagtaactatcat 451

                                                                       
Query: 121 gagataaatttgccgc-aggagcagggctctatcctttcctaaggttgtcaggcagtagg 179
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gagataaatttgccgcga-gagcagggctctatcctttcctaaggttgtcaggcagtagg 392

                                                                       
Query: 180 aaatgctgaaatatatcaaggtatgtatggatgtaaggttctggaatctgacacagtctg 239
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 391 aattgctgaaatatatcaaggtatgtatg-atgtaaggttctggaatctgacacagtctg 333

                                                                       
Query: 240 gggaagactcaaacaatatgactggagcagatcataaattgtcatttcctgagaagccca 299
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 332 gggaagactcaaacaatatgactggaacagatcataaattgtcatttcctgagaagccca 273

                                                                       
Query: 300 cacaatgactcttctgccttctctgccctctcttgaagtactagtgttcttgattacaag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cacaatgactcttctgccttctctgccctctcttgaagtactagtgttcttgattacaag 213

                       
Query: 360 agggtttaccta 371
           |||| |||||||
Sbjct: 212 agggcttaccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 770
Length adjustment: 9
Effective length of query: 362
Effective length of database: 761
Effective search space:   275482
Effective search space used:   275482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)