BAC Information

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BAC

Clone NameMSMg01-329P22
Chromosome5 (Build37)
Map Location 92,245,187 - 92,245,678
singlet/doubletsinglet
Overlap genenone
Upstream geneCxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
Downstream geneRchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329P22.T7 (MSMg01no329_p22.b1)MSMg01-329P22.TJ (MSMg01no329_p22.g1)
ACCAG446667AG446668
length758808
length of high quality
(start - end)		508 (34 - 541)109 (77 - 185)
definitionCHROMAT_FILE: MSMg01no329_p22.b1 PHD_FILE: MSMg01no329_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:38 2005CHROMAT_FILE: MSMg01no329_p22.g1 PHD_FILE: MSMg01no329_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGA
ATTCACTGTGAAGGCAGCCTGCGGAGCAGCACCGTCTCTTATACGCAGGG
GAATTTCAAACAAGAATAAACTATCAGTGAGCCACATAAGGCCTAAGCAC
ACTTGGCCTTTCTCCCTTTCCTGATATGATCCTGCAATTTTATAGGAATC
TCATCACCAGTCACTCCCTCTACCATAAAAGATGTCTCTCCAACCTCTTG
TGCAACCTTTATAGATCATTGTTTTATTTGATCAAATTGTAACCCCACCC
AACACATCCTCAGGAACTTTTGTTTGACCTCATTTATCAAAGAGAAGAGA
AAAAGATCCCTCGGAAACCCTGGGGTTAACTTCAGCACCTACCAAAGCAG
TAAGTATCCAGCTGCTGTGACCAACCCACAGCTATGTCTCTCTGTTAGCT
TCTACACCAAAATCTATGCCAAAAACATCTCCTGATAAACTCCAATTCTG
CTTCACAATGGCTCATCCTGAAAAATCATTTCTGTGTTGAAGCCAAGAAA
CCCAGCTTTATCTAAACAGAGAGAAATGTCAGAAACACTATTCAGGTTTA
CATCATGCGAGTGCCCCTACCCTCCTCTTCCTCCCCTTTTTTCACTTCCC
CTTCCCCCCCTTTTTTTTTTTTTTTCCCCCCCCCTTTTTTTCTTTCATAC
TTCCCCTCAAATTACCTCCCCATTTCTTTTCACAGATAATACATCCCCAT
ACTGATAN

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGCAAGTATTTTCTTGATGA
TGTTTGCATCTATATTCATTGAGGAAGTAGGTCTGTAGTCCTCCCCCACA
CTGTGTGTGTGTGTGTGTATGTGTATGTGTGTGTGTNTTTNTTTTTNNTN
TTTTTTNTTTTTTATTTTTTCTTTTTTTTTTTNNNTTTTCTTTTTTTTTT
TTTTTTCTTTCTTTTTCCTTTTTTTTTTCTTTTTTCTTCTTTCCTTCTCT
CCTTCCCCCACNCTTCCCTTTTTTTCTTTAACAAATATATTTAATTCTTC
TCTTTTATTAATTTTATTTCTCTTTTTTATTATTATTATATATTTTTTTT
TTTATTATGGTTTACACTCTTTTTTTTAAAATATAATATTTTTTTCTTTT
TTATATTTTTATACAATTAAAATTATCATTTTTTTATCACAATAAAATTT
ATTCCTTTTTTACCTTTTCTTTTATACCACTTTTACCTAAATATTTTTTT
TCTTTATCCATTCTTCATTTCTTTTTTGCTTTTGTATTTTTATTTTTTTT
TTTTACCCTTTTTTATTTTTTACTTCTCTTTTTTTTTTCCCCCATTTTTT
TTATTTTAACTTCTCTTTCTTTTTTATCTTATACCACTTTTATATTATTT
TTTATTACCTTTTTTCTTTCATTTACTCAATTCATGTTTCTCCTTTTTTC
TTCTTTCTTCTTTCTCTTTACTTTCTTACATTTTATCATTTCTTATCTTT
TTTCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_p22.b1 MSMg01no329_p22.b1 CHROMAT_FILE:
MSMg01no329_p22.b1 PHD_FILE: MSMg01no329_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:38 2005
         (508 letters)



>mm_chr5_92244972_92245878
          Length = 907

 Score =  878 bits (454), Expect = 0.0
 Identities = 484/494 (97%), Gaps = 3/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcactgtgaaggcagcctgcggagcagcaccgtctcttatacgcaggggaatttca 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcactgtgaaggcagcctgcggagcagcaccgtctcttatacgcaggggaatttca 275

                                                                       
Query: 76  aacaagaataaactatcagtgagccacataaggcctaagcacacttggcctttctccctt 135
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 276 aacaagaataaactatcagtga-ccacataaggcctaagcacacttggcctttctccctt 334

                                                                       
Query: 136 tcctgatatgatcctgcaattttataggaatctcatcaccagtcactccctctaccataa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcctgatatgatcctgcaattttataggaatctcatcaccagtcactccctctaccataa 394

                                                                       
Query: 196 aagatgtctctccaacctcttgtgcaacctttatagatcattgttttatttgatcaaatt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aagatgtctctccaacctcttgtgcaacctttatagatcattgttttatttgatcaaatt 454

                                                                       
Query: 256 gtaaccccacccaacacatcctcaggaacttttgtttgacctcatttatcaaagagaaga 315
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 455 gtaaccccacccaacacatcctcaggaactttcgtttgacctcatttatcaaagagaaga 514

                                                                       
Query: 316 gaaaaagatccctcggaaaccctggggttaacttcagcacctaccaaagcagtaagtatc 375
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 515 gaaaaagatccctcagaaaccctggggttaacttcagcacctaccaaagcagtaggtatc 574

                                                                       
Query: 376 cagctgctgtgaccaac-ccacagctatgtctctctgttagcttctacaccaaaatctat 434
           ||||||||||||  ||  |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 575 cagctgctgtgag-aagtccacagctatgtctctctgttagcttcttcaccaaaatctat 633

                                                                       
Query: 435 gccaaaaacatctcctgataaactccaattctgcttcacaatggctcatcctgaaaaatc 494
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gccaaaaaaatctcctgataaactccaattctgcttcacaatggctcatcctgaaaaatc 693

                         
Query: 495 atttctgtgttgaa 508
           ||||||||||||||
Sbjct: 694 atttctgtgttgaa 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space:   446706
Effective search space used:   446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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