BAC Information

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BAC

Clone NameMSMg01-330C21
Chromosome5 (Build37)
Map Location 151,559,492 - 151,559,716
singlet/doubletsinglet
Overlap geneAprin
Upstream geneB3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393
Downstream geneLOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330C21.T7 (MSMg01no330_c21.b1)MSMg01-330C21.TJ (MSMg01no330_c21.g1)
ACCAG446804AG446805
length790794
length of high quality
(start - end)
227 (76 - 302)287 (129 - 415)
definitionCHROMAT_FILE: MSMg01no330_c21.b1 PHD_FILE: MSMg01no330_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:51 2005CHROMAT_FILE: MSMg01no330_c21.g1 PHD_FILE: MSMg01no330_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAAAATGCGCG
GAATTCCACTTTGATTACAACATACAGAACTAAGGTGCCACTGAGACTCA
GGTAGTAGAGCCGTCTCAGCCAGCCCTTTCTAGGAGCTCTTTAGTTTGTA
GTCTGGTCCTTTGCAGTTGGCTGTGGACACTGACACTGTCCTCTTGAGCA
CCTCATTCTCTGTTGTCTATTTCTTTTCTTTTCTTTTCTTTTCTTTTCTT
TTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTA
TACTAAATTATTTAATTAATACATGTGTTTACACTGTACTTGTCTTCACA
CACATCATATTCGTATTTTTTTGATCCCCCCTCCCCTACGTTTTTTGTTA
TTTTATATATTTAATATATTTCATCGCTGCGATTTGAACTCAAAACCTTT
GCTATAGCAGACCGTTCCCTTAACTTATGAACCATATCTTCACTCCCCCC
CCCCTTTCTATATTCTATTTTCTTCTAAACAATAAAAAGAATTTGCTGTA
TTGTGATTCTGTTAAAATGATATGTTCATTGACAATGGCTTACGTAGGGA
TAGAGTAAAGGTCATCTTAATGCCTAGATATAGTATGCTGAAGTTTGACT
TTCTGTGTCCTGGATGCTTAGCCGGGGATGTCTCCTGTTCCTTTTTTTAA
CTCTTAACTTTAACCTCCCTTTTCCAACTACATAAAAACCTTCCCTTTTT
TTCCCAAACCCACCCTAAGTTTTCACCGTATCATTTTTTT
TTTTTTATTTTTTTTTATTTTTTTTCTTTTCTTCTCTCTTTAAAAAAANN
CCCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGGGCAGGAACCTGGAGG
CAGGAGTGAATGCAGAGGCCATGGAGGGATGCTGCTTACTGGCTTGCTCC
TCATGGCTTGCTCAGCCTGCTTTCTTATAGAACCCAGGACCACCAGCCAC
GGATAGCACCATCTGGCTTGGCTACAGCCAGATCTTACGGAGGCATTTTC
TCAACTGAAGTTTCTCCCTCTCCAATAAATCTATCTGTGTCAAGTGGATA
TAAAATTAACCAGTACACAATCTTAGAACAAAATAACAGATAAAAGGATT
TCACGAGTTTACATGACTGTTTTGTTCCCCGGGCCAACCCGTTTCTGGCC
AGGTTGGAGGCTAAAGCCAGGTCCTGGCTCTAAAAAGAAGACAGGCAAAC
AATGTCTAAGCTGCAATCGCTGGCATAAGGGACCCTAAGGGCTTTTTCCA
GTCTCACACCCTCCTTACAGCTTCACCGTCCTGCCTGGGATCAAGGCTAA
GCCAAGTTCCATTCTCCTCCCACAGGAACATTCTTGAGTAAAAAAATTCT
CAGAATGTACTGACTGATAGTCACCTGACCCCCTGCAAAGTCCCAGGGTC
AAATGCGTGTCATGTTTGCTAGCCAATAAATTTAAAGGTCAATATGCTTA
TCCTATATGTTTGACCTGTAATCTTGCTGGTGTCACCTGTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_c21.b1 MSMg01no330_c21.b1 CHROMAT_FILE:
MSMg01no330_c21.b1 PHD_FILE: MSMg01no330_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:51 2005
         (227 letters)



>mm_chr5_151559292_151559918
          Length = 627

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaactaaggtgccactgagactcaggtagtagagccgtctcagccagccctttctagga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agaactaaggtgccactgagactcaggtagtagagccgtctcagccagccctttctggga 260

                                                                       
Query: 61  gctctttagtttgtagtctggtcctttgcagttggctgtggacactgacactgtcctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctttagtttgtagtctggtcctttgcagttggctgtggacactgacactgtcctctt 320

                                                                       
Query: 121 gagcacctcattctctgttgtctatttcttttcttttcttttcttttcttttcttttctt 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gagcacctcattctctgttgtctatttcttttcttttcttttctttccttttcttttctt 380

                                                        
Query: 181 ttcttttcttttcttttcttttcttttcttttcttttcttttcta 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttttcttttcttttcttttcttttcttttcttttcttttcta 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)