Query= MSMg01no330_e07.b1 MSMg01no330_e07.b1 CHROMAT_FILE:
MSMg01no330_e07.b1 PHD_FILE: MSMg01no330_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:57 2005
(320 letters)
>mm_chr5_90128487_90129206
Length = 720
Score = 553 bits (286), Expect = e-162
Identities = 307/314 (97%)
Strand = Plus / Minus
Query: 5 gaattctatgtcattccccaaaatgtaggcaatgaaatagttttgtctcatttagtcttt 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaattctatgtcaggccccaaaatgtaggcaatgaaatagttttgtctcatttagtcttt 318
Query: 65 ttttaatgcactttgcctccttgttcatatgtagctgttgctgtaagcatccaaattaag 124
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttttaatgcactttgtttccttgttcatatgtagctgttgctgtaagcatccaaattaag 258
Query: 125 tggaacagtgttgtgaacatccatttcctttcagttagcaaaactgcagcgtgctgttgt 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 257 tggaacagtgttgtgaacatccatttcttttcagttagcaaaactgcagcgtgctgttgt 198
Query: 185 gttgctataatagaataccataggctgggtaatttataaaactaaaagaaagcaaagcct 244
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 197 gttgctataatagaataccataggctgggtaatttataaaaccaaaagaaagcaaatcct 138
Query: 245 aatgagtttaggtgctttggctgatggttctgggtctggaaagaccaaatgtggtgatgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aatgagtttaggtgctttggctgatggttctgggtctggaaagaccaaatgtggtgatgg 78
Query: 305 ggtcattcatgcta 318
||||||||||||||
Sbjct: 77 ggtcattcatgcta 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_e07.g1 MSMg01no330_e07.g1 CHROMAT_FILE:
MSMg01no330_e07.g1 PHD_FILE: MSMg01no330_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:57 2005
(289 letters)
>mm_chr5_89967136_89967823
Length = 688
Score = 478 bits (247), Expect = e-139
Identities = 276/289 (95%), Gaps = 7/289 (2%)
Strand = Plus / Plus
Query: 1 catgaacaggaacatctaacatcattccttacaaacacatgtctgacaggcatggcaaag 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 201 catgaacaggaacatctaacatcattccttacaaacacatatctgacaggcattgcaaag 260
Query: 61 gagcaggatgaatctagttgctttgtctttgccgtatttttatgttattttaaaatctaa 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gagcaggatgaatctagttgctttgtctttcccgtatttttatgttattttaaaatctaa 320
Query: 121 taacattgttgtctcctattcacaagagcaccatgataaaaaaa---ttttttgaatttg 177
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct: 321 taacattgttgtcttctattcacaagagcaccatgataaaaaaaaaatt----gaatttg 376
Query: 178 agtagggcctgagtaaaaacagttgctaaaggattgcccaagaatggtgatttacattag 237
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 377 agtagggcctgagtaaaaacagttgctaaaggattgcccaagaatggtgatctacattag 436
Query: 238 catgtcaggactctaatttggttgcgcagataacattgggtatatctga 286
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catgccaggactctaatttggttgcgcagataacattgggtatatctga 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
