BAC Information

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BAC

Clone NameMSMg01-330J01
Chromosome5 (Build37)
Map Location 63,014,443 - 63,014,715
singlet/doubletsinglet
Overlap geneCentd1
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330J01.T7 (MSMg01no330_j01.b1)MSMg01-330J01.TJ (MSMg01no330_j01.g1)
ACCAG447085AG447086
length875838
length of high quality
(start - end)
277 (105 - 381)293 (129 - 421)
definitionCHROMAT_FILE: MSMg01no330_j01.b1 PHD_FILE: MSMg01no330_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:18 2005CHROMAT_FILE: MSMg01no330_j01.g1 PHD_FILE: MSMg01no330_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTCATAAAATGTTTGNTCGATGGGTTTATTTTTTTTTTGTCCTTATTN
NCCTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTTAGTATTAAGGAACACCACTTAGGAAGTCATAT
TTTTATATAAAAACATGAATCGAAGGTTTGTAAATCTTTGTTTGAGAGAG
AGCATGATATATCTGTTTGCCTTGAGCATACCAAGTACTCTGTTTTGTTC
GGTGTGTGTTTGTTTTGTTTGTTTTTGCAGCAGTGAGCATTGAACTTTGC
CTTCAGGGCAGAAGCTGTGCTCCAGCTTTTATACTCATGATTCTGAAGAG
TTTTCCTAATTGTAAAATAGTAGCTCAATAGCGTTATTATTTTAGTATTT
GTTCTCTTATCTGAAGTGGTAACTATTTAAGTAGCACTCCGGTCGAACCC
CCCATGTATGAGTGGAAGTATAGGTAATAGGGTGTTGGAATAAGAAAATA
AAAAAAACCGATATTGAGTGAAGTAGTGCCTGCTAGTGTACGCTGCGTAT
TATTCTCCTCAAGGAGATTTAGCGCTTTAGAGCGTGCTTGGACTCTTCCG
ACCTGTTACATTAACATAGGTGAGTTTAGGTTTCCCCGAGTCAGATTCTC
TCTTATCTCATTTCTTTCCTTTAGGATAAATCCTTGTGAATATATCCATC
TCTTATTTTTATTTGAAAGTAACTTAATGTAACCATTTTCCTTTCCTAAT
GTCCCTTTTTTCCCTGGTTGTTTCCCTCTCCATTTCCACTTTCTTTTCCT
TTTAATCTTAAAAAAAACGCAAACTTATGTCTTTACCATGGGCCTCTCCT
GGCCTCCTATATATATCTTGGCGTN
TTATTCCTTTAAATCCCCTTACCCCTAACTCTCTNATTATTACTTTTNNT
CTTCTATGATATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATCTTTCCAAGACTTTTAT
CGTGAATGGGTATTGGATCTTGTCAAATGCCTTTTCTGCATCTAACGAGA
TGATCATGTGGTTTTTGTCTTTCAGTTTGTTTATATAATGGATTACATTG
ATGGATTTCCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGA
GAATTTTATTGAGGATTTTTGCATCGATATTTATAAGAGAAATTGGTCTG
AAGTTCTCTATCTTTGTTGTATCTTTCTGTGCCCCACCCCTCAGAGTAAT
AGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGT
GAAATAGTTTGTGCATAACTGGAATTAGATCTTCTTTGAAGGTCTGATAG
AACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTTTGGCTGGGAGA
CTATTAATAACTGCTTCTATTTTCTTTATGGGTTATGGGACTGTTTAAAA
AGTTAACTTTGATCCTGATTCCACTTTTGGAACCCTGGTATTCTGCCCCA
GAAATTTTGACCATGTTTTTCTCCCCTTTTGTTGAATTAATATCCTTCTT
GTAATAAGGAATCTGAATGGCGCTTTTGCGATTTCCTTCAAGAATCCTGT
ACGGTTATGGCCCTCCCCTTTTTCTATTCTCCTGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_j01.b1 MSMg01no330_j01.b1 CHROMAT_FILE:
MSMg01no330_j01.b1 PHD_FILE: MSMg01no330_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:18 2005
         (277 letters)



>mm_chr5_63014239_63014915
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttagtattaaggaacaccacttaggaagtcatatttttatataaaaacatga 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 477 gaattcagttagtattaaggaacaccacttaggaggtcatatttttatataaaaacatga 418

                                                                       
Query: 65  atcgaaggtttgtaaatctttgtttgagagagagcatgatatatctgtttgccttgagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atcgaaggtttgtaaatctttgtttgagagagagcatgatatatctgtttgccttgagca 358

                                                                       
Query: 125 taccaagtactctgttttgttcggtgtgtgtttgttttgtttgtttttgcagcagtgagc 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 taccgagtactctgttttgttcggtgtgtgtttgttttgtttgtttttgcagcagtgagc 298

                                                                       
Query: 185 attgaactttgccttcagggcagaagctgtgctccagcttttatactcatgattctgaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 attgaactttgccttcagggcagaagctgtgctccagcttttatactcatgattctgaag 238

                                            
Query: 245 agttttcctaattgtaaaatagtagctcaatag 277
           |||||||||||||||||||||||||||||||||
Sbjct: 237 agttttcctaattgtaaaatagtagctcaatag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)