BAC Information

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BAC

Clone NameMSMg01-330N12
Chromosome5 (Build37)
Map Location 4,828,091 - 4,828,327
singlet/doubletsinglet
Overlap genePftk1
Upstream geneKrit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330N12.T7 (MSMg01no330_n12.b1)MSMg01-330N12.TJ (MSMg01no330_n12.g1)
ACCAG447291AG447292
length802740
length of high quality
(start - end)
184 (123 - 306)237 (123 - 359)
definitionCHROMAT_FILE: MSMg01no330_n12.b1 PHD_FILE: MSMg01no330_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:38 2005CHROMAT_FILE: MSMg01no330_n12.g1 PHD_FILE: MSMg01no330_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAGGATCCGCG
GAATTCTGAATTTCTTCACAAATGGATGGAACTAGAAAATATCATCCTGG
GGCTGGCGAGATGGTTCAGCGGGTAAAAGCACTAACTGCTCTTCTGAAGT
TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCTATAA
TGAGATCTGACATCCTCTTCTGGCGCATCTGAAGATAGCAACAGTGTACT
TAGATATAATAATAAATCAGAAAGGGGGGAGAGAGGGAGGGGAGAAGGAG
GGAAGGAAGGCCGTTTTTTTTTTTTTCCCGACCAAACCCAAAAAAAAACC
AGAAATTTTTTAGTACTTTCCCCCCCCCCCCCCCCCCTATTATATTTTTT
TAGTTTTTTTTTTTTTTTTCCTTTAAAAAAAAAAAAAATAAACATCCGTT
TGGGGGCTTTTTTCTTTTTTTATCTTAACCCCCCAGCACCGCTACATTCT
CTATATCATCTACCTTATTTTTTCTCTCCATATCTCCATTTATATTAAAT
TACCCTCTCCTTTTTCCTTTTACTGCTCATATGATATATCATTCCCTATC
CTTATCTTACACTCAATTTTTTCTATTATATATTCACTCGCCGCTTCCCC
CCCCCCCTTTTTTCCTCTCCGATTATCTGCTTATTCTTCCATTGTATTTT
TTTCTCTTCCTCGACTTTTTTCGATATTTCACTATGTTTCATCCTCCCAT
TTATTTCCTTTATATCTCACATTTTTTCCAACCCGCTCAAATTTTTTTAC
CG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGAGGTGAAAACTGCATGTCTGTGGATG
GTGTGGGATGTTGTTGTTCCATCAACTGTATAATTCTAAATTCAAATAAG
AACACTAAGAACACTGGCCTTTTGCCCTAGTTTCTTTCATGCTCAGATCT
GCAGTAAGGACAGCAAACAACAAAGCAAGGAACAGGAGGATTCATACTCT
TGTGAGAGGTCTCAACAATGAGCTACCACTTGAGATTTAGCAGGTCCTCT
GGTTTGTAGGCAGTTACACAGTTCCAGTGATCACTGGTCAGCCTTTGGAT
ATGCATGTTTTTTATTTAACCACCCCCCCCATAATTTTGTCTTTTTATCA
AGCTACAGCAATAGAACCAAATGATAAAAAGATACAGGAGATAAACATTT
CTCACATCTGTTCAGCACTTCCAGGGTTAGAATCTGATCATTTAATTGTT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTATTATTTTTATATG
GTTTTGTTAATCTGTTAGACTTATATTTAAGTATTCTTCACATATTTTGT
CAAATTTGAATTAATGTTAGGGTTTTAAAAATCCCACTTGGTAAAAATAA
AGGCTTGTAATAATAAAAATAAAAAAGTTTTTGGTTTATTGATAATATTT
GCCCGTTAAAAACAAGATCTTATTTACTTTTTTAAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_n12.g1 MSMg01no330_n12.g1 CHROMAT_FILE:
MSMg01no330_n12.g1 PHD_FILE: MSMg01no330_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:38 2005
         (237 letters)



>mm_chr5_4827891_4828527
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactgtataattctaaattcaaataagaacactaagaacactggccttttgccctagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 caactgtataattctaaattcaaataagaacactaagaacactggcctcttgccctagtt 260

                                                                       
Query: 61  tctttcatgctcagatctgcagtaaggacagcaaacaacaaagcaaggaacaggaggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttcatgctcagatctgcagtaaggacagcaaacaacaaagcaaggaacaggaggatt 320

                                                                       
Query: 121 catactcttgtgagaggtctcaacaatgagctaccacttgagatttagcaggtcctctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catactcttgtgagaggtctcaacaatgagctaccacttgagatttagcaggtcctctgg 380

                                                                    
Query: 181 tttgtaggcagttacacagttccagtgatcactggtcagcctttggatatgcatgtt 237
           |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtatgcagttccacagttccagtgatcactggtcagcctttggatatgcatgtt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)