BAC Information

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BAC

Clone NameMSMg01-331B23
Chromosome5 (Build37)
Map Location 36,086,051 - 36,086,385
singlet/doubletsinglet
Overlap genenone
Upstream geneGprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1
Downstream geneAblim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331B23.T7 (MSMg01no331_b23.b1)MSMg01-331B23.TJ (MSMg01no331_b23.g1)
ACCAG447501AG447502
length724741
length of high quality
(start - end)
---334 (68 - 401)
definitionCHROMAT_FILE: MSMg01no331_b23.b1 PHD_FILE: MSMg01no331_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:59 2005CHROMAT_FILE: MSMg01no331_b23.g1 PHD_FILE: MSMg01no331_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCGCCAANGAANCCCACATTTCCCACCCGCNGAANCAGNCCCGT
TACCNNACCGGGGAGGGGNCNGNNNCCNCCCNAGGAGAGGAAAGGAAANG
TTACCCCCACACAGGCACACACACGCACACAAGCGGAAGGAACACACANA
CACGCAGACGCACACACAGGCACACGCACACACANACACACACAAGCCGG
AGGAACACCCAAAGCGCCCCACACCCACAGGCCGTTTTTTAATAGCAATT
CAAGCAAGCCTCCAGCTCCTTGCACACCTTGCAACTCCCCCCGCAACACT
ATTTTTTTTTTTTAGCCCCCNGCCGNCAGGGACGGCAACGGAGGAAGNCG
GACCCCCCCCCCACANAGNAAGAGAAGGGCACACGCCGGAGCCCCCCACC
CCCCCGCACCCAGAAGACACACCCAGCACAGCGAAGAGCGACCCGCCGCC
AGAGCACGGGCCCAGCCACACCCCAGACCCAGCAGGCCCCGGAAAGCCAG
GAAGCAGGCCGCCCGGACACAGAGAGCGCCGAGGCCACGAAAGGCGAACA
GCCCGGAGCAGACCCGCACCAGCAGACCCCCAGCGAAGCCNACACGCCCC
GCGGGCCACCCCGAAAGCAGACCGCGAGCGCACAGGAGAGCTTTTTTTTT
TATTGTGCTTCCTCGATTCCGCCCCCCCCCTTTGGCCCATACCATCCCAC
GATATGTTAGAGCCGAGCGCTGTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCTGCCAAAACTTGGCAGTTCTCCTCTTTCATGTTCCTGGACTATGAG
TTTGGACCACGTGACCTCAGCCAGTGTCCTCGCCCTCTGTGAGTCTGAGT
ATCCCTGACTGAAATGGGTCAGGCCTGTTTTTCTGTTCCCTGCCTGTGGC
CTGCTGGATTTCAGCTTTTCCCAGTCTGTCCTCTCAAGGAGTCCTATGCT
GCCCTGATGCTACCTATGAAGCCCTCTGAAGGCTGCAGCCCTGCCTCTAA
GGAGCTTTTTTTGTCTTAGCCTTGCAGTTCCCCAACTCTGGCCTGTTACC
TACCTCACCGGCAGCTGCCCTGAAAGGCCAGATCCTTCCAAGGAGTGGGG
AGATAGGCCCCCCCCGGATCAGGAGACTTTCTTGGGTCATACAACCACTC
CTGAATGTCACTTGTGTGACCCAGTAAGTCTAGCCACAGGCTAGGTGGGG
CAAGATACAGGAGACGGTTAGGACACATTGCAATTTGCAGTGTGTAACGG
CGACTTCCTTCCCTTATACTTGATCCTCCTGAGTCCTTGTGGATGCTAGC
TTGTGTTTCTGTCTCTAGCCCTGGTCTCTGTTGCCCTGTGCTTTCCCCCT
TTTTCCTTTTCTTGTTCTCCCCTGGTTTTATCCACGTTTTTTAAGCTTTA
GCTCTTTTGCTCTATTTCTCCCTTTTTTGTACTCTCTCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_b23.g1 MSMg01no331_b23.g1 CHROMAT_FILE:
MSMg01no331_b23.g1 PHD_FILE: MSMg01no331_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:59 2005
         (334 letters)



>mm_chr5_36085851_36086585
          Length = 735

 Score =  601 bits (311), Expect = e-176
 Identities = 329/335 (98%), Gaps = 1/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttctcctctttcatgttcctgg-actatgagtttggaccacgtgacctcagccagtg 59
           ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttctcctctttcgttttcctggcactatgagtttggaccacgtgacctcagccagtg 260

                                                                       
Query: 60  tcctcgccctctgtgagtctgagtatccctgactgaaatgggtcaggcctgtttttctgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctcgccctctgtgagtctgagtatccctgactgaaatgggtcaggcctgtttttctgt 320

                                                                       
Query: 120 tccctgcctgtggcctgctggatttcagcttttcccagtctgtcctctcaaggagtccta 179
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tccctgcctgtggcctgctggatttcagcttttctcagtctgtcctctcaaggagtccta 380

                                                                       
Query: 180 tgctgccctgatgctacctatgaagccctctgaaggctgcagccctgcctctaaggagct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgccctgatgctacctatgaagccctctgaaggctgcagccctgcctctaaggagct 440

                                                                       
Query: 240 ttttttgtcttagccttgcagttccccaactctggcctgttacctacctcaccggcagct 299
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttgtcaaagccttgcagttccccaactctggcctgttacctacctcaccggcagct 500

                                              
Query: 300 gccctgaaaggccagatccttccaaggagtgggga 334
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 gccctgaaaggccagatccttccaaggagtgggga 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 735
Length adjustment: 9
Effective length of query: 325
Effective length of database: 726
Effective search space:   235950
Effective search space used:   235950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)