BAC Information

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BAC

Clone NameMSMg01-331C16
Chromosome5 (Build37)
Map Location 29,139,269 - 29,139,777
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331C16.T7 (MSMg01no331_c16.b1)MSMg01-331C16.TJ (MSMg01no331_c16.g1)
ACCAG447535AG447536
length738741
length of high quality
(start - end)
509 (68 - 576)671 (71 - 741)
definitionCHROMAT_FILE: MSMg01no331_c16.b1 PHD_FILE: MSMg01no331_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:02 2005CHROMAT_FILE: MSMg01no331_c16.g1 PHD_FILE: MSMg01no331_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAGAAAATCCGCGGAATTC
TGTCTGCTTAGCACCCGAGTATGGGTGCTAACTGAAGGCAGGATCCAAAC
ATAAGTTGGAACTCTCTAGAAATTCTTGAGGTCTTGGGAAAATACTTCAT
CTCATTCTGAATGAAAACCTGATTCTTCAATTTACACACATCCTTGAGTA
CAGTGACAAGTTCTCCAGTCAGGGCAGATAAGAAGGAAAGGTAGCCATGA
TTGGCAGCCTAAGGCAGGCCCAGACGCAGTGCCAGCTCCTTGAGCCAAGG
AGCTTGGTGGTACCCATGTCAAGGGAGGATCCCAGCCGTCAGGCCTTCGG
CACGTGGTCCTGTGAGCCCTTCTACATGTCAGGGTCTTGATTGTGTGTTC
TGAGTTGTAAAACTACCTCCCACCAGCACTTTTTCTGGCTGTATACACAG
GAGCTTCCTTCTCAGCCCTGAACGTACATGTACTGCTGGCAAGGGAAATA
TAACACCATCAGTATATGAAAAGACAGTCGGTGCCACTATTTCTAAAGGT
TAAGATGGTATATATAAAGGGTGAGAGTGGGGTATGAGCGAGGAGAATCA
CAGAGCTTCAGAAGAACTAGTCTCACTCACCTCCTGCTCAGGTGCCAGCT
CACCGTCTTCCAGAAGTTTCCTTTGTAAGTAGCCCTGAGAAGCAGCTGTT
GTCATCCTACCTCTGCCCTGCCTCCTCCCTGAGAATGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGCCCATAGCAGCATTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAAC
ACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_c16.b1 MSMg01no331_c16.b1 CHROMAT_FILE:
MSMg01no331_c16.b1 PHD_FILE: MSMg01no331_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:02 2005
         (509 letters)



>mm_chr5_29139069_29139977
          Length = 909

 Score =  953 bits (493), Expect = 0.0
 Identities = 505/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatgggtgctaactgaaggcaggatccaaacataagttggaactctctagaaattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 agtatgggtgctaactgaaggcaggatccaaacataagttggaactctctagaaattctt 650

                                                                       
Query: 61  gaggtcttgggaaaatacttcatctcattctgaatgaaaacctgattcttcaatttacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaggtcttgggaaaatacttcatctcattctgaatgaaaacctgattcttcaatttacac 590

                                                                       
Query: 121 acatccttgagtacagtgacaagttctccagtcagggcagataagaaggaaaggtagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acatccttgagtacagtgacaagttctccagtcagggcagataagaaggaaaggtagcca 530

                                                                       
Query: 181 tgattggcagcctaaggcaggcccagacgcagtgccagctccttgagccaaggagcttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgattggcagcctaaggcaggcccagacgcagtgccagctccttgagccaaggagcttgg 470

                                                                       
Query: 241 tggtacccatgtcaagggaggatcccagccgtcaggccttcggcacgtggtcctgtgagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tggtacccatgtcaagggaggatcccagccgtcaggccttcggcacgtggtcctgtgagc 410

                                                                       
Query: 301 ccttctacatgtcagggtcttgattgtgtgttctgagttgtaaaactacctcccaccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||
Sbjct: 409 ccttctacatgtcagggtcttgattgtgtgttctgagttgtaaaattagttcccaccagc 350

                                                                       
Query: 361 actttttctggctgtatacacaggagcttccttctcagccctgaacgtacatgtactgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 actttttctggctgtatacacaggagcttccttctcagccctgaacgtacatgtactgct 290

                                                                       
Query: 421 ggcaagggaaatataacaccatcagtatatgaaaagacagtcggtgccactatttctaaa 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggcaagggaaatataataccatcagtatatgaaaagacagtcggtgccactatttctaaa 230

                                        
Query: 481 ggttaagatggtatatataaagggtgaga 509
           |||||||||||||||||||||||||||||
Sbjct: 229 ggttaagatggtatatataaagggtgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)