BAC Information

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BAC

Clone NameMSMg01-331M02
Chromosome5 (Build37)
Map Location 101,181,278 - 101,181,777
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse
Downstream geneHel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331M02.T7 (MSMg01no331_m02.b1)MSMg01-331M02.TJ (MSMg01no331_m02.g1)
ACCAG447970AG447971
length729732
length of high quality
(start - end)
339 (44 - 382)516 (73 - 588)
definitionCHROMAT_FILE: MSMg01no331_m02.b1 PHD_FILE: MSMg01no331_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:42 2005CHROMAT_FILE: MSMg01no331_m02.g1 PHD_FILE: MSMg01no331_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAAATCCGCGGAAT
TCTCTGTGTTGCACCTTAATCTTCCTAAATGTGGTGGTTTGAATATACTT
GGCCCAGGGAGTGGCTCTACCTAGAGGTGTGGCCTTGTTGTAGTTGTAGC
CTTGTGGGAGTAAGTGTGTGTAGGTGTGGGCTTTAAAATGCTCATCATAG
CTGCCTGGAAGTCAGTCTTCAGATGAAGATATATAGCTCTCAGAAACTCC
TGCACCATGCCTGCCTGGATGCTAGCATGCTCCCACCTTGATGATAATGG
ACTGAACCTCTGAAACTATAAGCCAGCCCCAATTCAATGTTGTCCTTATA
AGAGCTGCTTTGGTCATGGTATCTGTTCATACCAGTAATACCCTATTACA
CTATACCTCACTTACCACGCAAAAGTTCTTCAGCATAATTTTAATTTCCA
AACACTGTAGATATGTAGCTCTGATGGCACAGTATTTGTCTCCCATTCAG
GAGACTCTGGGCTTGATTCCCATCAGGTCATAAAGCCAGGCGTGGTGACG
CACAGTTGCAATCCCAGAATAGCATCGTTTTTTGGTCAACCTTCTGCCAC
TCAAGTCTGAGGTTATCTTGTTCCATACACTATAGGAGACCTTCTTTCTC
CACCCTTAAATATTTGCCATTCTGCAACTTCATAAAATCCGCCCTGGTTC
TAAAGGAACATATTTGTTCTTTAAATATG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTCCAGCTAAATCTAGTGATAGATAA
GCCCTAGGGTGGTTCCTTTAGAGAGCTTGTGCCACTGTATAGCCCCTTTC
TTTCACAGTGCTGATCTTCTAATACACAGTTATACACACACACACACACA
CACACACACACACACACACACACACTCATACACATACACAGACTCACATG
TACACACACTCACACATCACATTCACATACATTCACACACATTCATACAC
ATACACACACACACACACTCACACATATACACAGACTCACATGTACACAC
ACTCACACATTATATTCACATACATTCATACACATACACACACATTCACT
CATACACACACATATACACACACTCATACACACACATGCACTCACACACA
TACACACACTCACACATCACATTCACACAAATACACATACTCACACACAT
TCACTCATACACACACACACACTCATACACATACACACACTCACACACAT
ACACACACTCACACATCACATTCACTCAAATACACACACTCACACACATT
CACTCATACACACACACACACTCATACACACACACACACTCATACACATA
CACACACTCACACACATACACACACACATCACATTCACACAAATACATTC
ACACACATTCAGTCATACACACACTTACATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_m02.g1 MSMg01no331_m02.g1 CHROMAT_FILE:
MSMg01no331_m02.g1 PHD_FILE: MSMg01no331_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:42 2005
         (516 letters)



>mm_chr5_101181078_101181993
          Length = 916

 Score =  913 bits (472), Expect = 0.0
 Identities = 498/516 (96%), Gaps = 16/516 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttccagctaaatctagtgatagataagccctagggtggttcctttagagagcttgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttccagctaaatctagtgatagataagccctagggtggttcctttagagagcttgtgc 260

                                                                       
Query: 61  cactgtatagcccctttctttcacagtgctgatcttctaatacacagttatacacacaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 261 cactgtatagcccctttctttcacagtgctgatcttctaatacacagttat--------- 311

                                                                       
Query: 121 cacacacacacacacacacacacacacacacactcatacacatacacagactcacatgta 180
            ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 312 -acacatacacacacacacacacacacacacactcacacacatacacagactcacatgta 370

                                                                       
Query: 181 cacacactcacacatcacattcacatacattcacacacattcatacacatacacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cacacactcacacatcacattcacatacattcacacacattcatacacatacacacacac 430

                                                                       
Query: 241 acacactcacacatatacacagactcacatgtacacacactcacacattatattcacata 300
           |      |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 a------cacacatatacacagactcacatgtacacacactcacacattatattcacata 484

                                                                       
Query: 301 cattcatacacatacacacacattcactcatacacacacatatacacacactcatacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cattcatacacatacacacacattcactcatacacacacatatacacacactcatacaca 544

                                                                       
Query: 361 cacatgcactcacacacatacacacactcacacatcacattcacacaaatacacatactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cacatgcactcacacacatacacacactcacacatcacattcacacaaatacacatactc 604

                                                                       
Query: 421 acacacattcactcatacacacacacacactcatacacatacacacactcacacacatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acacacattcactcatacacacacacacactcatacacatacacacactcacacacatac 664

                                               
Query: 481 acacactcacacatcacattcactcaaatacacaca 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 665 acacactcacacatcacattcactcaaatacacaca 700



 Score =  186 bits (96), Expect = 4e-51
 Identities = 257/330 (77%), Gaps = 49/330 (14%)
 Strand = Plus / Plus

                                                                       
Query: 116 acacacacacacacaca--cacacacacacacacacacactcatacacatacacagactc 173
           ||||| || ||||||||  ||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 595 acacatactcacacacattcactcatacacacacacacactcatacacatacacacactc 654

                                                                       
Query: 174 aca----tgtacacacactcacacatcacattcac----atacat----tcacacacatt 221
           |||    |  |||||||||||||||||||||||||    |||||     |||||||||||
Sbjct: 655 acacacat--acacacactcacacatcacattcactcaaatacacacactcacacacatt 712

                                                                       
Query: 222 ca----tacacatacacacac----acacacactcacacat-atacacagactcaca-tg 271
           ||    |||||| ||||||||    |||||||| ||||| | ||||||| || |||| | 
Sbjct: 713 cactcatacacacacacacactcatacacacacacacac-tcatacacacacacacact- 770

                                                                       
Query: 272 tacacacac-t-cacacattatattcacatacattcatacacatacacacacattcactc 329
             ||||||| | ||||||| | ||||||| | || ||  ||||| |||||||||||| | 
Sbjct: 771 --cacacacatacacacatcacattcacacaaataca--cacattcacacacattcagtt 826

                                                                       
Query: 330 atacacacacata--tacacacactcatacacacacatgcactca------cacacatac 381
           |||||||||||||  || ||||||||| ||||| || | ||||||      |||||||| 
Sbjct: 827 atacacacacatacatatacacactcacacacatac-t-cactcataaatacacacatat 884

                                         
Query: 382 ac----acactcacacatcacattcacaca 407
           ||    |||| ||||||| | |||||||||
Sbjct: 885 acttatacacacacacatta-attcacaca 913


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 217
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)