Query= MSMg01no331_m04.b1 MSMg01no331_m04.b1 CHROMAT_FILE:
MSMg01no331_m04.b1 PHD_FILE: MSMg01no331_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:42 2005
(663 letters)
>mm_chr5_39997870_39998932
Length = 1063
Score = 1174 bits (607), Expect = 0.0
Identities = 645/659 (97%), Gaps = 3/659 (0%)
Strand = Plus / Minus
Query: 5 gaattctagagtggccccaagatacctgccctttgatgtatatatcttgtttagtgacct 64
||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 953 gaattctggagtggtcccaagatacccgccctttgatgtatatatcttgtttagtgacct 894
Query: 65 cccctcacaactgagtagcatttgaaaatagtataggtcatttgttaccttaattaggtt 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 cccctcacatctgagtagcatttgaaaatagtataggtcatttgttaccttaattaggtt 834
Query: 125 aatctgtatggcaaagaaaatagcttttaatttagtagatcagttcagaaagagatggga 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 833 aatctgtatggcaaagaaaataacttttaatttagtagatcagttcagaaagaaatggga 774
Query: 185 atgaagataaaggagggggagacatgtcctcctggctttgcttgctatggataacaggac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 atgaagataaaggagggggagacatgtcctcctggctttgcttgctatggataacaggac 714
Query: 245 tctgagaagatgatataccaaaaaactgttgtggctagtacaaattaagggtatttctag 304
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct: 713 tctgagaagatgatataccaaagaactgtcgtggctagtacaatttaagggtatttctag 654
Query: 305 aaacattcagcatggatgtttgcaaatatctcattttttcccaacactagtgagcaaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaacattcagcatggatgtttgcaaatatctcattttttcccaacactagtgagcaaaga 594
Query: 365 agaagatactgattagaaaatgttctgtctgaaagcttgtttttatcttaggaaactctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agaagatactgattagaaaatgttctgtctgaaagcttgtttttatcttaggaaactctc 534
Query: 425 ccatggcaggcttggtctcctgagtcacctacactgagttaatagatgtgtattgactta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccatggcaggcttggtctcctgagtcacctacactgagttaatagatgtgtattgactta 474
Query: 485 acctgctgtgatctattaatgtgcttgcctttatgttaatacaaagacttgagtcaattt 544
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acctgctgtgatctagtaatgtgcttgcctttatgttaatacaaagacttgagtcaattt 414
Query: 545 ttttctagtccattcaaatggcttgtgcttatttttcaatgtctgctttcaaaacaaaca 604
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 413 ttttctagtccattcaaatggcttgtgcttacttttcaatgtctgctttcaaaacaaaca 354
Query: 605 aaatccttgggttttgttgttgttgttgttgttgttaccaaataaatacaagtacatta 663
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaatccttgggtt---ttgttgttgttgttgttgttaccaaataaatacaagtacatta 298
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_m04.g1 MSMg01no331_m04.g1 CHROMAT_FILE:
MSMg01no331_m04.g1 PHD_FILE: MSMg01no331_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:43 2005
(634 letters)
>mm_chr5_39925881_39926914
Length = 1034
Score = 1187 bits (614), Expect = 0.0
Identities = 629/634 (99%)
Strand = Plus / Plus
Query: 1 cctttcttcatcatctatgtccagcttgaatttctgttgctttcatctcagtgaagcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttcttcatcatctatgtccagcttgaatttctgttgctttcatctcagtgaagcact 260
Query: 61 aggcatgcctttgtgtgatgatcaatggtcattgtcaactggattgtcttgccccacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcatgcctttgtgtgatgatcaatggtcattgtcaactggattgtcttgccccacctt 320
Query: 121 cgggggtgtctataaggatatttctaaaagggattatgatttattctggatatggaggtc 180
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 caggggtgtctataaggatatttctaaaagggattatgatttatcctggatatggaggtc 380
Query: 181 ctcatctcatgaactgaagtccaagactgagctatgaagatgggcaaagagaaatccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcatctcatgaactgaagtccaagactgagctatgaagatgggcaaagagaaatccagc 440
Query: 241 tcagtgtctgcagctcccctttctactttcccatatgcctaggagtaaacacataacaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtgtctgcagctcccctttctactttcccatatgcctaggagtaaacacataacaca 500
Query: 301 cacaggctctggtccaaacatggtccaggctggacagaagccatggtccaggcatcatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaggctctggtccaaacatggtccaggctggacagaagccatggtccaggcatcatcc 560
Query: 361 ctcatggctcctcttccatgaagaactgagttccctgaattgtgagccaaaataaagctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcatggctcctcttccatgaagaactgagttccctgaattgtgagccaaaataaagctt 620
Query: 421 ccctccctaaagctgcttcttatcaggcatttgatcacaacatcgagaaaattaactaat 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 ccctccctaaagctgcttcttatcaggcatttggtcacaacatcgagaaaattaactaat 680
Query: 481 acatgagatctttccactctgggatgtgggagtcatctaaactgtaaggttcagggatgc 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatgagatctttctactctgggatgtgggagtcatctaaactgtaaggttcagggatgc 740
Query: 541 tcagtcaagaaatcaaaagatccaggccaaggtttttttggttccagaactggaaagaga 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 tcagtcaagaaatcaaaagatccaggccgaggtttttttggttccagaactggaaagaga 800
Query: 601 taactcaatgaatgccaggaatttaatatcttca 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 taactcaatgaatgccaggaatttaatatcttca 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
