BAC Information

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BAC

Clone NameMSMg01-332G09
Chromosome5 (Build37)
Map Location 24,004,522 - 24,167,353
singlet/doubletdoublet
Overlap geneCentg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik
Upstream geneSrpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1
Downstream geneNub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332G09.T7 (MSMg01no332_g09.b1)MSMg01-332G09.TJ (MSMg01no332_g09.g1)
ACCAG448442AG448443
length1,2591,293
length of high quality
(start - end)
551 (125 - 675)662 (126 - 787)
definitionCHROMAT_FILE: MSMg01no332_g09.b1 PHD_FILE: MSMg01no332_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:48 2005CHROMAT_FILE: MSMg01no332_g09.g1 PHD_FILE: MSMg01no332_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,004,522 - 24,005,072)(24,166,839 - 24,167,353)
sequence
NNCCGCGTCGCGGGGNNCCATTGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCCATCTCTGTTCTTATTCATTATAGGATGGGTGTGGATCAA
GTGAGCCTCTGACGGTCTTTCAGAGTTGTATGGCCCAGAGCCCACTGTGG
CCTAGGGACCCAGGACCCCAAGGGGGTAGAGAAGCTCACACAAGGGGAGA
TGGAGAGAGGAGCTACCGGTTTACATGTGGGCAAAGGCATTCTCTTAAGG
GTCCGTCCTCAGGAGGAACCCAGCAAGAGAAAATTTTCAGGGATGTGCTG
TCACTGAGGTGAGAGACTGCGGGGCCAGAGAAGTAGCCAGAACTTAGGGT
CAGGGGTGTCCCTGGCGGAATGTATGGCTCACTCTAGGGTCATATAAGCA
CTGTGTCTCTCTTGCCCCCATGTCAAGTCACACTGCCCAGTGACAGTTGT
TCGGGGCCAGTGACCTCTGGAAATAGATATGTCTGAATGTCTTTCCGGGG
TCTAATGGGCAAGCACAACTCCCGGGTCACAGTGTGGACTCCTGTGCTTG
TCACTACAGATGTCCTTGGGTTCCTGTTGGTTCCCATCTTCCAGTTCTTG
GAGAAAACATCTCTTCCCCCACCCACTTGCCCTTCCTGCCTGTCTACACC
AGGGCAGTGGGGGAGGGGCCTAGCTCCCAGGAGCCCTGTGCTGACGCCGT
CCAGAATATTGGGTTTAATGAGCTGCAAAATGAGGAGGCTGCAGCTGACA
CGTACGGATGGTGCTCACACCCGCCTCCTTGCCCGGGATGTGGCTTCTAT
TACCGCCGCGGCCTTCTCCGACACTTAAATCATGTCTCTCCCGGTTGGCT
CCCCCTGGGGGCCATTCCTGATATTGTTTTTGAAGANAAGNACAGNAACC
CCCATTTTTTTGGTTTCTCGGTGGGTAGAAACAGAAAGGAAGGGAATCCC
CCTTGTGCCTTTTTTAAAAAAAGAAAAAAGTGTTTTAACCGGGTCTGGTT
GGGGTTTTGGATTGGGTTGGGGGCCTCTGTTTTATTTTTATTTAAAAAAT
TAAAGGTCATTTTTTTCCCCTTTCAAAAAAATCTTTGTTTTTGGTTTGTG
TCCTCTTTTGGTCAATTGGTTATTTATGTCTTCTCCTAACAAAGCTTTAA
ATTTTCTAAAACNNTTTGTCTTTTCGTCCTCTTCACATTTTTCTCTTTAT
CNTAAACTATTTATTTGTTATCTCTTTTTATCTCCTTTATTCTTATTTCT
TTATTATTA
CCCGCACTTTTNNNAAACAAGTGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATAAAAGGAACACACCACAAA
ACTTCTGGGGGTGCTCTCGTTGATTCCTGCTGCTTCCATGGACTCAGGCC
AATTGGCAGAGTGATGTCTGTTGATACAGGCTCACGTGGTTAGGCAAGAC
AATAAAAAAGAAAAGAAACTGAGTATAAAAAAAAATCATAGGAAGAAATA
TTTAGTTTGAAAGTCCTTAAGGAGAGAGTTAGAGATTAAAAAGAAAAATA
TTTTCTGTTAAAATGGAAAACGTGCCAGGCGTGGTGGCACACGCCTTTAA
TCCCAGCACTTGGGAGGCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAG
CCTGGTCTACTATGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC
CTGTCTCGAAAACAAAACAAAACAAAAAAAGGAAAACGCAATGGCACAAC
ACACCTGGATCCCATGTGACTTTGTTCCATTTACCAGCATGTACATAATA
ATGATTAAAAATTTATATATCCTCTTTAAGAAAGATATCAGAATACATCA
GACTTAGAGGACCGAAAAATGGAATTCTGGGTTACAAGATATAAAACAGA
GGTTAGAGGATTCTTTAAATCAGAATAAAGAACCTTCAGAAGAGTCCAGT
CTGGAACTTACAATAACAGCAAAAAAGGGTAGTTCCAGGTGAGAAGAATC
CACAAAGCCTCGAGGAATTAGAATGCAACCCATAAAGATGCAGTATATTG
AATTAAGAATTTAGCCGGGCAGTGGTGGCACACACCTTTAATTCCAGCAC
TCGGGAGGCAGAAACAGGTGGATTTCTGAGTTCAAGGCCAGCCCGGTCTA
ACAAGTGAGTTGCAAGAACAGCAGGGCTATACAGAGAAACAAGGCCCCTA
AGCCAACTGAAGCAAGCACTCCCAGAGACTGAACCAGCATGCCCAGGGCC
TAGTGGGTCTGCCCCAGCCCTCAGGGAAGGGTTATGGCTTCCAGTTTAAA
TGTTATATGGAAATTCTGGGTGGGTGAAAAAGGGGGTCTCTGAACTTTGG
GCTTCCCCCCAAACCTTTTCCCCCCGGGTTTTTTTATTCTTTTTTTTGGT
CACATTCAAGCGGCCAAGTTTGTTTTTCACCTATACGTGTATTAATCCTA
TCTACCCCCCTTTTAATTCCCCCGCGAAGCCGTTTTCAATAGAAATAAAA
AAATTGTCTTCCTATACATGTGGGCGCTTTAACATACCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_g09.b1 MSMg01no332_g09.b1 CHROMAT_FILE:
MSMg01no332_g09.b1 PHD_FILE: MSMg01no332_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:48 2005
         (551 letters)



>mm_chr5_24004322_24005272
          Length = 951

 Score = 1050 bits (543), Expect = 0.0
 Identities = 549/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgtatggcccagagcccactgtggcctagggacccaggaccccaagggggtagagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgtatggcccagagcccactgtggcctagggacccaggaccccaagggggtagagaag 260

                                                                       
Query: 61  ctcacacaaggggagatggagagaggagctaccggtttacatgtgggcaaaggcattctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacacaaggggagatggagagaggagctaccggtttacatgtgggcaaaggcattctc 320

                                                                       
Query: 121 ttaagggtccgtcctcaggaggaacccagcaagagaaaattttcagggatgtgctgtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagggtccgtcctcaggaggaacccagcaagagaaaattttcagggatgtgctgtcac 380

                                                                       
Query: 181 tgaggtgagagactgcggggccagagaagtagccagaacttagggtcaggggtgtccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggtgagagactgcggggccagagaagtagccagaacttagggtcaggggtgtccctg 440

                                                                       
Query: 241 gcggaatgtatggctcactctagggtcatataagcactgtgtctctcttgcccccatgtc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gcggaatgtatggctcactctagggtcatataagcactgtgtctctctagcccccatgtc 500

                                                                       
Query: 301 aagtcacactgcccagtgacagttgttcggggccagtgacctctggaaatagatatgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtcacactgcccagtgacagttgttcggggccagtgacctctggaaatagatatgtct 560

                                                                       
Query: 361 gaatgtctttccggggtctaatgggcaagcacaactcccgggtcacagtgtggactcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatgtctttccggggtctaatgggcaagcacaactcccgggtcacagtgtggactcctg 620

                                                                       
Query: 421 tgcttgtcactacagatgtccttgggttcctgttggttcccatcttccagttcttggaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcttgtcactacagatgtccttgggttcctgttggttcccatcttccagttcttggaga 680

                                                                       
Query: 481 aaacatctcttcccccacccacttgcccttcctgcctgtctacaccagggcagtggggga 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 aaacatctcttcccccacccacttgcccttcctgcctgtctataccagggcagtggggga 740

                      
Query: 541 ggggcctagct 551
           |||||||||||
Sbjct: 741 ggggcctagct 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no332_g09.g1 MSMg01no332_g09.g1 CHROMAT_FILE:
MSMg01no332_g09.g1 PHD_FILE: MSMg01no332_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:48 2005
         (662 letters)



>mm_chr5_24166292_24167353
          Length = 1062

 Score =  973 bits (503), Expect = 0.0
 Identities = 512/515 (99%)
 Strand = Plus / Minus

                                                                        
Query: 148  agagagttagagattaaaaagaaaaatattttctgttaaaatggaaaacgtgccaggcgt 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 agagagttagagattaaaaagaaaaatattttctgttaaaatggaaaacgtgccaggcgt 1003

                                                                        
Query: 208  ggtggcacacgcctttaatcccagcacttgggaggcagaggcaagcagatttctgagttc 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 ggtggcacacgcctttaatcccagcacttgggaggcagaggcaagcagatttctgagttc 943

                                                                        
Query: 268  gaggccagcctggtctactatgtgagttccaggacagccagggctacacagagaaaccct 327
            |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 942  gaggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccct 883

                                                                        
Query: 328  gtctcgaaaacaaaacaaaacaaaaaaaggaaaacgcaatggcacaacacacctggatcc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  gtctcgaaaacaaaacaaaacaaaaaaaggaaaacgcaatggcacaacacacctggatcc 823

                                                                        
Query: 388  catgtgactttgttccatttaccagcatgtacataataatgattaaaaatttatatatcc 447
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 822  catgtgactttgttccatttgccagcatgtacataataatgattaaaaatttatatatcc 763

                                                                        
Query: 448  tctttaagaaagatatcagaatacatcagacttagaggaccgaaaaatggaattctgggt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  tctttaagaaagatatcagaatacatcagacttagaggaccgaaaaatggaattctgggt 703

                                                                        
Query: 508  tacaagatataaaacagaggttagaggattctttaaatcagaataaagaaccttcagaag 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  tacaagatataaaacagaggttagaggattctttaaatcagaataaagaaccttcagaag 643

                                                                        
Query: 568  agtccagtctggaacttacaataacagcaaaaaagggtagttccaggtgagaagaatcca 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  agtccagtctggaacttacaataacagcaaaaaagggtagttccaggtgagaagaatcca 583

                                               
Query: 628  caaagcctcgaggaattagaatgcaacccataaag 662
            |||||||||||||||||||||||||||||||||||
Sbjct: 582  caaagcctcgaggaattagaatgcaacccataaag 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)