Query= MSMg01no332_n08.b1 MSMg01no332_n08.b1 CHROMAT_FILE:
MSMg01no332_n08.b1 PHD_FILE: MSMg01no332_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:43 2005
(419 letters)
>mm_chr5_9089805_9090620
Length = 816
Score = 772 bits (399), Expect = 0.0
Identities = 413/419 (98%), Gaps = 3/419 (0%)
Strand = Plus / Plus
Query: 1 ctgaccacaaatgctgagaataggggttactgttataggagactttatgcacacacatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaccacaaatgctgagaataggggttactgttataggagactttatgcacacacatgc 260
Query: 61 ataaagcaaatagaaaaaaaaaaacctggagacttgtgggaagagaaagcacagtgatag 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagcaaatagaaaaaaaa---cctggagacttgtgggaagagaaagcacagtgatag 317
Query: 121 aacaccgaatctcaatcagaagaaagtgggtccttcacataccaccaaaggatgggagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aacaccgaatctcaatcagaagaaagtgggtccttcacataccaccaaaggatgggagat 377
Query: 181 agactgacatgggtgggaggaagtgctgggaaagctactgcagacaggctgagattctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agactgacatgggtgggaggaagtgctgggaaagctactgcagacaggctgagattctgg 437
Query: 241 gtgttgacaaagttcaaaatgtgcaaaacatacagcatagacagtgcgtatgaagaatca 300
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 438 gtgttgacaaagttcaaaatgtgcaaaacatacagcagagacagtgcggatgaagaatca 497
Query: 301 ggatgcagaccaagaatcaaggagctgaggtggtggccatggcagcagcagcagcagcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggatgcagaccaagaatcaaggagctgaggtggtggccatggcagcagcagcagcagcag 557
Query: 361 tggtgttggtggtggtggcagtggttatgtgtgtgtcttaaatgggggtaggggatggg 419
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 558 tggtgttggtggtggtggcagtggttatgtgtgtgtcttagatgggggtaggggatggg 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 816
Length adjustment: 9
Effective length of query: 410
Effective length of database: 807
Effective search space: 330870
Effective search space used: 330870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_n08.g1 MSMg01no332_n08.g1 CHROMAT_FILE:
MSMg01no332_n08.g1 PHD_FILE: MSMg01no332_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:43 2005
(763 letters)
>mm_chr5_9250179_9251340
Length = 1162
Score = 1444 bits (747), Expect = 0.0
Identities = 759/763 (99%), Gaps = 1/763 (0%)
Strand = Plus / Minus
Query: 1 agagtcctaactcttctttaaactgccctaagacagacactttataatgatagtttttgt 60
||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct: 902 agagtcctaactcttctttaaactgtcataagacagacacttcataatgatagtttttgt 843
Query: 61 ggatatagtacccaactccaagaacagcggccttaatcatttttctataaaaagatttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ggatatagtacccaactccaagaacagcggccttaatcatttttctataaaaagatttta 783
Query: 121 ttgaccaaaagcaacactgggtgagatgacatctagtcatggcatccactaagttaacag 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ttgaccaaaagcaacact-ggtgagatgacatctagtcatggcatccactaagttaacag 724
Query: 181 aagcagcatggtggcctccaaactatccagattgttgttccagcaagaacaaaagcttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aagcagcatggtggcctccaaactatccagattgttgttccagcaagaacaaaagcttgt 664
Query: 241 tctacactggaagaaatgtggtgcaatccgcagaagaaaagtcaatgtaacaatttttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tctacactggaagaaatgtggtgcaatccgcagaagaaaagtcaatgtaacaatttttca 604
Query: 301 attgatcattagcctgtggtggtcgccagctatcagttctttattgagacgtgtgtgatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 attgatcattagcctgtggtggtcgccagctatcagttctttattgagacgtgtgtgatc 544
Query: 361 ttcattactatggtggtaggcccttcgttgtgtatgacttcattgacaattgactgacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttcattactatggtggtaggcccttcgttgtgtatgacttcattgacaattgactgacat 484
Query: 421 caacatgatgggtcaactgactcatgtgatcatagtccctttgtttaaaacaaatggttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caacatgatgggtcaactgactcatgtgatcatagtccctttgtttaaaacaaatggttc 424
Query: 481 tcaaatggttcattcaccattattctccaatcttccttaccaccagccttctgatcttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcaaatggttcattcaccattattctccaatcttccttaccaccagccttctgatcttgt 364
Query: 541 tgtctgccatcttttcccctacgtagccaaacctctccatacctatgaactgtagatatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgtctgccatcttttcccctacgtagccaaacctctccatacctatgaactgtagatatt 304
Query: 601 tgatcacaccatcatccaggtaatatataccaagttatatgcattactggactgcccttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgatcacaccatcatccaggtaatatataccaagttatatgcattactggactgcccttt 244
Query: 661 ctccactgtcccacagggcttatttttaaagttggcccttaagtttaaaaataaaaataa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctccactgtcccacagggcttatttttaaagttggcccttaagtttaaaaataaaaataa 184
Query: 721 tttaaggctaagaataatgaaccaaaaggcaaggaaaaattaa 763
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tttaaggctaagaataatgaaccaaaaggcaaggaaaaattaa 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1162
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1152
Effective search space: 867456
Effective search space used: 867456
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
