BAC Information

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BAC

Clone NameMSMg01-332P08
Chromosome5 (Build37)
Map Location 3,354,192 - 3,354,749
singlet/doubletsinglet
Overlap geneCdk6
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726
Downstream gene5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332P08.T7 (MSMg01no332_p08.b1)MSMg01-332P08.TJ (MSMg01no332_p08.g1)
ACCAG448845AG448846
length1,3151,310
length of high quality
(start - end)
543 (152 - 694)656 (99 - 754)
definitionCHROMAT_FILE: MSMg01no332_p08.b1 PHD_FILE: MSMg01no332_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:58 2005CHROMAT_FILE: MSMg01no332_p08.g1 PHD_FILE: MSMg01no332_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGTTTTTTGGGNNNCCATTGGGCGCATCGACTCCTATGGGAGAGGA
TCCGCGGAATTCCTGATCTTTCCAGACCCTTCACGTCTCTCAGNGNNGGA
NNNNGNCAAAGGCNNCCCCTTTAAAACCCCCCACGANCATGNGGNTNTTG
NCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATT
AAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGA
TTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGTATT
TTTGCATCGATATTCCCAAGGGAAATTGGTCTGAAGTTCTCTGTCTTTGT
TGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATG
AGTTGGGTATAGTACCTTCTACTTCTATTTTGTGGAATAGTTTGTGCAGA
ACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGTATTAAGCCC
ATCTGGTCTTGAGCTTTTTTTGACTGCTTCTATTTCTTTAGGGCATATGG
GACTGTTTAGATCATTAACTCGATCCTGGTTTAACTTTGGTACCTGGTAT
CTGTCTAGAAACTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTA
TAGCCTTTTGTAAAAGGATCTGATGGTGTTTTGGATTCCTTCAGGATCTG
TTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATTAGAATGCTGTCC
CTGTGCCCTCTAGTGAGTCTGGCTAAGGGTTTATCAATCTTGTTGATTTT
CTCAAAGGACCAGCTCCTCGTTTGGTTGATTCTTTGAATAGTTCTTCTTG
TTTCCACTTGGTTGATTTCGCCCTGAGNTTAATTATTTTCTGCTATCTAC
TCCTCTTTGGGGGAATTGCTTCCTTTTTTTTTAAAGCTTTTAAGGGGGGT
GTCCGACTGGCTAAGGGGGCTTTCCCACATTTCTTTTTTTAGGGACTCCA
AACTTTAAATTTTCTTTTATAAAAAGCTTCTTAAGGTTCCTAAAAATGGG
GAGAGTGGGGGGTTCTTTTTTTTAAACTCTAAAAAATTTTAATTTTTTTC
TTTATTTTTTCTGGCCCGATATTATGGAGAAAAAGGTGTGTCTTTTTCTG
TGCCGGGGGAATGTCCTTATTATTTGGTATTGAAAAAAACCCAACACACC
GGCCACAAGGAGGGGTGAGGAGAAAAATATAATAAATCGGTTATGGTTGT
CACATTGTTCTTTGNATAACNCTGTGCCGTAAAAAAACATTTAGCGNNCA
AANCCTATATACCCT
CGATGTCCTNNNNNAACGAGGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTACGGCGCCGCTTANCAGT
TGGTTTTCTCATTGACCCCCTAGAAAATTCCCCAAACCGTATTCTCACCC
CTCATTTCCGACTCTAGATAAGTTCCTCAGAAATGGACTCAGACGCCAAC
ACTAGCAGGGGTGAAAAGTTCCATTTAGTACCTATATTAGCTACTGAGGC
TTTATTAAAATTTAATGTAGAGTGGTGGGGAGGTGGCTCAGCAACAGGCA
ATAGCTTGCTGTGTAAGTACGAGGACCAGAGTTCAGATGCCCAGCAGCCA
TGTAAAGCTGGACAGGCAGGACAATCCCCTGTCATCCTAGCACCCCGAGT
GAGTTGGTCTGTTAGGCTAGCCAGAATCGACTAGCTCTGGGTTGGCTGAG
GAAGTCTGTCTCAGGAGATAACAGGGTCGAGCAACTGAAGATGCTGCCCC
AAATCAACCTTATCCACCCCTACACTAGAAATGTGTGCACCCCCACACAT
ATATAACATAGAGCACATATGTGCAAACATATACAAACACACATATCCCA
CTTGGGTGCACAATACACACAAGATAGATACACACACATACACACACACA
CACACACACACACACACACACACACACACACACACGCCAACACTCTTAAA
GTAACACAGCGGAATTCAGCATTTTTATCAATGTACTATTCATAATGTTT
GACCTTCAACATAAAAAAGTTAGGTAGATGTATAGGAAAATGTGGGCTGT
AATTAAGAGGAAAATCAGTCCTCCAAGGTAGATTCAGAAGTGACACCATT
TATGGAAGAACAAGACCCTAACAATATTATTATATAAATTTATTATAATA
TGATTATAAATATATTAAAACCCTATTCCAAAAACTTAAAGGGACCCCAA
ATAAGTCAAGGGCAAAAATGATGAGTAGTTATCAAGTCAAATTCTCCCAA
AGACCCAACAAATTGTTATTGAATTAAAATCCTACAGAAAATTTTCCTAT
TACAAAGTATTTTAATTAAAAGGAAAAACTTTGGCAAAATTCGGTTTAGA
AATTTAAAATCCACAGGGCCAAAAAAGTTTTAAAATTAAATTTTTGGAAT
TGGAGGCAGGGAACCTTGTTATCCCAAAATTTGTGGGGGCTATAAAAGTG
CGAGTGTTCACTGGCCCCCTTCTTCACCGCTTAAAAGAGGGCTCTCCAAA
AAAACCTCGGGGATTTTTCTCTCAGAACTTGGGAAAAACCTCTGCTTTTT
CCCCAGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_p08.g1 MSMg01no332_p08.g1 CHROMAT_FILE:
MSMg01no332_p08.g1 PHD_FILE: MSMg01no332_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:58 2005
         (656 letters)



>mm_chr5_3353694_3354749
          Length = 1056

 Score = 1011 bits (523), Expect = 0.0
 Identities = 553/569 (97%), Gaps = 11/569 (1%)
 Strand = Plus / Minus

                                                                        
Query: 88   gactcagacgccaacactagcaggggtgaaaagttccatttagtacctatattagctact 147
            |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1056 gactcagaagccaacactagcagggatgaaaagttccatttagtacctatattagctact 997

                                                                        
Query: 148  gaggctttattaaaatttaatgtagagtggtggggaggtggctcagcaacaggcaatagc 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  gaggctttattaaaatttaatgtagagtggtggggaggtggctcagcaacaggcaatagc 937

                                                                        
Query: 208  ttgctgtgtaagtacgaggaccagagttcagatgcccagcagccatgtaaagctggacag 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  ttgctgtgtaagtacgaggaccagagttcagatgcccagcagccatgtaaagctggacag 877

                                                                        
Query: 268  gcaggacaatcccctgtcatcctagcaccccgagtgagttggtctgttaggctagccaga 327
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 876  gcaggacaatcccctgtcatcctagcaccccgagtgagttggtctgctaggctagccaga 817

                                                                        
Query: 328  atcgactagctctgggttggctgaggaagtctgtctcaggagataacagggtcgagcaac 387
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 816  atcgactagctctgggttggttgaggaagtctgtctcaggagataacagggtcgagcaac 757

                                                                        
Query: 388  tgaagatgctgccccaaatcaaccttatccacccctacactagaaatgtgtgcaccccca 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  tgaagatgctgccccaaatcaaccttatccacccctacactagaaatgtgtgcaccccca 697

                                                                        
Query: 448  cacatatataacatagagcacatatgtgcaaacatatacaaacacacatatcccacttgg 507
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 696  cacatatataacatagagcacatatgtgcaaacatatacgaacacacatatcccacttgg 637

                                                                        
Query: 508  gtgcacaatacacacaagatagatacacacacatacacacacacacacacacacacacac 567
            ||||||||||||||||||||||||||||||||||          ||||||||||||||||
Sbjct: 636  gtgcacaatacacacaagatagatacacacacat----------acacacacacacacac 587

                                                                        
Query: 568  acacacacacacacacacacgccaacactcttaaagtaacacagcggaattcagcatttt 627
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 586  acacacacacacacacacacgccaacactcttaaagtaacacagcggaattcagca-ttt 528

                                         
Query: 628  tatcaatgtactattcataatgtttgacc 656
            |||||||||||||||||||||||||||||
Sbjct: 527  tatcaatgtactattcataatgtttgacc 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)