Query= MSMg01no333_h04.b1 MSMg01no333_h04.b1 CHROMAT_FILE:
MSMg01no333_h04.b1 PHD_FILE: MSMg01no333_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:38 2005
(339 letters)
>mm_chr5_148766139_148766876
Length = 738
Score = 578 bits (299), Expect = e-169
Identities = 329/339 (97%), Gaps = 1/339 (0%)
Strand = Plus / Minus
Query: 1 tgtgcccagtaagtagaccaaaagtaagcaccatcttaacacttgtatgttttaatttaa 60
||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 538 tgtgcccagtatgtagaccaaaagtaatcaccatcttaatacttgtatgttttaatttaa 479
Query: 61 tttacattttaatctgttttagtgctgtaatggggaactgtaaaacagaatcaaatgttc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 478 tttacattttaatctgttttagtgctgtaatggggaattgtaaaacagaatcaaatgttc 419
Query: 121 tttggtaggggagaagagacttagaataagcagatgtctcaaagcaggtcactcacaact 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttggtaggggagaagagac-tagaataagcagatgtctcaaagcaggtcactcacaact 360
Query: 181 cgccaagcagagcttcctgggacttggtatggtggtttattttggaaggtgttcctcaga 240
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 359 ctccaagcagagcttcctgggacttggtatggtggtttattttggaaggtgatcctcgga 300
Query: 241 agcaggtgacatgaaattcaaacaataagacaatgtaatgtggtggtttcagtaagaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agcaggtgacatgaaattcaaacaataagacaatgtaatgtggtggtttcagtaagaatg 240
Query: 301 gatccctgtgggaggtttgggtgggaatggctccccata 339
|||||||||||||||| |||||||||||||| |||||||
Sbjct: 239 gatccctgtgggaggtctgggtgggaatggccccccata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 738
Length adjustment: 9
Effective length of query: 330
Effective length of database: 729
Effective search space: 240570
Effective search space used: 240570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_h04.g1 MSMg01no333_h04.g1 CHROMAT_FILE:
MSMg01no333_h04.g1 PHD_FILE: MSMg01no333_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:38 2005
(284 letters)
>mm_chr5_148581203_148581885
Length = 683
Score = 503 bits (260), Expect = e-147
Identities = 278/284 (97%), Gaps = 1/284 (0%)
Strand = Plus / Plus
Query: 1 cctaaactgtcctctgacgaaatgtcccaagggctttagaacaaacaacaacagcaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaaactgtcctctgacgaaatgtcccaagggctttagaacaaacaacaacagcaatga 260
Query: 61 caaaattaaatcagtcagtccccagccactttacagaaagggccaaactttttatacttc 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 caaaattaaatcagtcagtccccagccactttacaaaaagggccaaactttttatacttc 320
Query: 121 tcactgaacaatgaaaaggacttaaataggcgtgcctgtcaacactgctgttgcctgatg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tcactgaacaatgaaaaggacttaaatag-cgtgcctgtcaacactgctgttgcctgatg 379
Query: 181 ccgttgaccatacacagaagggcacaagacctagaccaatttcctatgtctgtgttagta 240
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgttgaccatacacagaaacgcacaagacctagaccaatttcctatgtctgtgttagta 439
Query: 241 aacaaagatcgctttgctttgatactgctggattagttcttagg 284
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 aacaaagatcgctttgctttgatactgctggattagctcttagg 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space: 185350
Effective search space used: 185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
