Query= MSMg01no333_p07.b1 MSMg01no333_p07.b1 CHROMAT_FILE:
MSMg01no333_p07.b1 PHD_FILE: MSMg01no333_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:14 2005
(626 letters)
>mm_chr5_69604086_69605111
Length = 1026
Score = 1114 bits (576), Expect = 0.0
Identities = 618/638 (96%), Gaps = 13/638 (2%)
Strand = Plus / Plus
Query: 1 tactgttccagataatgaagaaatctcttactttagaagctatggatatttcaacaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactgttccagataatgaagaaatctcttactttagaagctatggatatttcaacaattt 260
Query: 61 ataaattctacctaaacttggatttctttccccaatgataggttcatatattcaatactc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaattctacctaaacttggatttctttccccaatgataggttcatatattcaatactc 320
Query: 121 agataattcaaatccccacatcaagtatttgccaaactgaatctctctgttattaatggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agataattcaaatccccacatcaagtatttgccaaactgaatctctctgttattaatggt 380
Query: 181 actacatctttccagcagctcaggcaaaagctgtggagtattgagagattccttcctttg 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 actacatctttccagcagctcaggcaaaagctgtggagtattgagagcttccttcctttg 440
Query: 241 ggactgaagtactattaccagtaatgaatatgggctcctcttgtagaaaaaccaagtctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggactgaagtactattaccagtaatgaatatgggctcctcttgtagaaaaaccaagtctg 500
Query: 301 aaggaacaggagatctgaagccctcttctggattgtatgaaaatcttcagccatatccac 360
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 aagtaacaggagatctgaagccctcttctggattgtatgaaaatcttcagtcatatccac 560
Query: 361 ttttctacataca--cacacacacacagacacacaca--cacacacacacacacacacac 416
||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 561 ttttctacatacatacacacacacacacacacacacatacacacacacacacacacacac 620
Query: 417 acacacacagaca--------cacacaaaccaattgaataataaaaacaaaaagaaagct 468
||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacacacacacatacaaacacacacaaaccaattgaataataaaaacaaaaagaaagct 680
Query: 469 aggcgtggtggcgcacacctttaatcccagcacttggcaggcagaggcaggcaaacttct 528
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 aggcgtggtggcgcacacctttaatcccagcacttggcaggcagaggcaggcgaacttct 740
Query: 529 gagttcaaggccaacctggtctacaaagtgagttccaggacagggctacaacacagagaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagttcaaggccaacctggtctacaaagtgagttccaggacagggctacaacacagagaa 800
Query: 589 accctgtctcgaaaaacaaaaaacaaaaaaaacaaaag 626
||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 accctgtctcgaaaaacaaaaaacaaaaaaa-caaaag 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_p07.g1 MSMg01no333_p07.g1 CHROMAT_FILE:
MSMg01no333_p07.g1 PHD_FILE: MSMg01no333_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:14 2005
(340 letters)
>mm_chr5_69753896_69754635
Length = 740
Score = 601 bits (311), Expect = e-176
Identities = 332/339 (97%)
Strand = Plus / Minus
Query: 1 actctgtagaccaggctggccttgaactcagaaatatgcctgcctctgcctcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 actctgtagaccaggctggccttgaactcagaaatatgcctgcctctgcctcccaagtgc 573
Query: 61 tgagattaaaggcatgcaccaccactgcccagcatgacttttttttttaacctgtaacac 120
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 572 tgagattaaaggcatgcaccactactgcccagcatgactttttttttaaacctgtaacaa 513
Query: 121 ttttctctttaatttaatatttaagtgtatattcttgataaatttacaaactttgtctgg 180
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 512 ttttctcttttatttaatatttaagtatatattcttgataaatttacaaactttgtctgg 453
Query: 181 ttatttcaaagaacatacttttgcttctaaaacaaactttgaattgtatttgttagcttt 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttatgtcaaagaacatacttttgcttctaaaacaaactttgaattgtatttgttagcttt 393
Query: 241 cactatcatatggctcatctatcacatttacaatttcattctccatgtctatgtgacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cactatcatatggctcatctatcacatttacaatttcattctccatgtctatgtgacaaa 333
Query: 301 acagatcatgtcattttgattgcatgagtttggaatgtg 339
||||||||||||||||||||||||||||||| |||||||
Sbjct: 332 acagatcatgtcattttgattgcatgagtttagaatgtg 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
