BAC Information

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BAC

Clone NameMSMg01-334B08
Chromosome5 (Build37)
Map Location 107,681,883 - 107,682,125
singlet/doubletsinglet
Overlap geneTgfbr3
Upstream geneLOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, LOC666518
Downstream geneBrdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334B08.T7 (MSMg01no334_b08.b1)MSMg01-334B08.TJ (MSMg01no334_b08.g1)
ACCAG449667AG449668
length813735
length of high quality
(start - end)
44 (68 - 111)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no334_b08.b1 PHD_FILE: MSMg01no334_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:24 2005CHROMAT_FILE: MSMg01no334_b08.g1 PHD_FILE: MSMg01no334_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXCTANATGCCGAGGGTGCGCGGATT
CCACAGCAATCAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTCTCACACCACCTGATGATGAGCACGCAGACGAAGTCACAG
TGAATGAGAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATGTTTA
CCCTCGAGGTCTCCCCTTTCCACAATGCACGAGACGCGAAGTGGAATTCC
GCGGTTACACCACTTTTTTTCTGACACAGCAAAAAGCAATCGGTATAATA
TAATCCCTATTTTGTTTCACCCCCACCCCCCCTGGTTGTTCCCTCCCACG
TCTTCCCANAAAAATATCCCAACCCCCCCTGCCTGGCGCCTGTCCTCGTT
AAATCGGCCGCACCACGCCCTTTTTAATTACTGATCGTCCCACGGAAACG
CCTGATTATTTTCCTTGAACTCCCGTCGCTCGTAACTCTGTCTCTATTCC
CCATATCTGCCCAGTCACGATCTACAACGAATAAATTTTTTTTTTACTAG
CCCGCCCCCGTTGCCTAGTTCTTCCCCTGCCTTTCTTCCCCTTTTTTTTT
TCCTTATTCCCCGTTCCTGCCTTTCATCCCCTATATTTCGCCCTTTCGCT
TATTAACCGATTCCCCTCTTTTTCCTCCCCGCTCCCCTTTTTTCCTACCC
CCGCACCTCCCTCCCACTTACTATTCCAACGTCTTTTCCCCATCTTATCC
TCACCCCCTTTTG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACTAGCAAAATTCTGGGCATCTAAGCTACAGTTTGTGT
GCTTTTGTGGTTCCCCTGAGCACTCTGGGACACTGTTCTGTGGTTGTAGT
TACTGTGTTGAGACATGGTAGGAACCAGGGTCACTTACTACAAGGAGCAA
CCTTTGGGAGTGATCTGCTCATTGAATGGGCTTGACAATTCTGTGATGCT
TGTCAGTCAAAGGTTGCCTTTGGGAAGAGGGAGGAGTTCTGATTTGAGCT
GATTTGCTTTTCTATTTTTTCTTCCCAGGCAGNAAAAGGCCTGTGAAAAA
CCAAGTATAATCCTGAGGAGCCCACAGCTCCAGGAGGTAGTCTTTCTGTG
TTTTGAGACTGACCTACGGAAGTTTAGAGGAAAGTCTTCAAATTTTTCTC
TTCACCCCCTGCTGTTCCCACCCCTTCTTCAGACTTCCTCTACTATGTTT
ATCTTGTTGGCATATGGAGCAGGCTATACTTCTGGGTGGCCTTAGATAGC
GAAGACTACATATCACATCCCCCCCCTTATCACTTATAATCCTCCCCCCC
TAATTGTGCTTATGGGTAAAACGACTTATTTTGACCGTGCCGCTATTTTA
TACTTTTCCCCCCCCCCCTTTTCTTTCCCCCCCCCCCTCTTCCTCCCCCT
TTCCCCTTTTCGTCCCTTCCCCCCCCCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_b08.g1 MSMg01no334_b08.g1 CHROMAT_FILE:
MSMg01no334_b08.g1 PHD_FILE: MSMg01no334_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:24 2005
         (244 letters)



>mm_chr5_107681683_107682326
          Length = 644

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgggcatctaagctacagtttgtgtgcttttgtggttcccctgagcactctgggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attctgggcatctaagctacagtttgtgtgcttttgtggttcccctgagcactctgggac 384

                                                                       
Query: 61  actgttctgtggttgtagttactgtgttgagacatggtaggaaccagggtcacttactac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actgttctgtggttgtagttactgtgttgagacatggtaggaaccagggtcacttactac 324

                                                                       
Query: 121 aaggagcaacctttgggagtgatctgctcattgaatgggcttgacaattctgtgatgctt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaggatcaacctttgggagtgatctgctcattgaatgggcttgacaattctgtgatgctt 264

                                                                       
Query: 181 gtcagtcaaaggttgcctttgggaagagggaggagttctgatttgagctgatttgctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtcagtcaaaggttgcctttgggaagagggaggagttctgatttgagctgatttgctttt 204

              
Query: 241 cta 243
           |||
Sbjct: 203 cta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)