BAC Information

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BAC

Clone NameMSMg01-334C11
Chromosome5 (Build37)
Map Location 117,497,863 - 117,498,146
singlet/doubletsinglet
Overlap geneLOC665073
Upstream geneLOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
Downstream geneSuds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334C11.T7 (MSMg01no334_c11.b1)MSMg01-334C11.TJ (MSMg01no334_c11.g1)
ACCAG449721AG449722
length787741
length of high quality
(start - end)
239 (50 - 288)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no334_c11.b1 PHD_FILE: MSMg01no334_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:29 2005CHROMAT_FILE: MSMg01no334_c11.g1 PHD_FILE: MSMg01no334_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCCTATTTTCTGAGCTCCGCGGAATTCACTTTGTTGACCAAAATGGC
CTCAAACTCAGAAATCTGCCTGCCTCTGCCAACTGAGTGCTGGGATTACA
GGAGTATGCTACCACGCCCGGCTCTTTTGTATCATTAGAGTTGAAAAATA
ACATCACTCTCTCTCCCTCACTCTTTAGTTCTTTTCCTAAGATTTATCTT
GTATGTGTATCTTTGTGCATATGTGTATGTGTGTGTTCATGTGTGTCTAT
GTGTGTGTATGTGGATATGTGTATGTATGTGTGTATGCGAATTTTTTTTT
TTTTCTCCTTCCCTTGTTTGTTTGCTCTCTTTTTCTTTTTATTCTTTTTT
TTCACCCCTTCTTTTATTCTTTCTTCTTGTTCCTATTTTTTAATCTCTCT
CCTCACTCTTTTTTTTTTCTTACACCTTTTCCCTTCTCTTTTTTTTTTTC
ATTTTTCATTAAATAACATTATACTGTATCTACTTCGATCCTATATTTCT
TCATTTATTTTTTCTCTATTTTTTCTCAATACTTTCCTACCTCTTTTCCT
GCTTGTATCTTTCATTCTCGACTTTTTTTATATTATTTTTTACCTATATC
CTTTTTTCTCTCTTTACCCTCTCTCACCTTTTTATAATATCTTCATCCCC
ATTTTATTTATTTTCTATACTCACTTACACTCATCTTAATTATTCTTCTT
CCTATTTTATTCCTTCCCTCATTTCCCATTCATTTTTTGTCCTTCTCCCC
CTCTTCTTATTTTTTTACTTTTCTCTCTCACTTCCCT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTCCAAAAAATACATTGAAATCCACTGAAAATTACACCAATCA
TTTATTGACTGAATGCATCATGTAGGGGGTCTCTCACTAGATAGATGGAG
ACCCCCTATATCCAATATGATGATCGGCTGAGTTAAGATTCTTGACTGCT
CATCATAGGGGCTATGCTCTGAGCACTGCGCTACACCACACATATAATAA
TCACAGTGCCGACTCTTCACAGGTACTCAATGAGCTACGGATTCCATTCC
CCCACCTCTGATTCTTTTTTGCTGACAGTGGAGTTCAGAGCAGTGACCTG
ACCCATTCTAGGTCACCACCCGCACGTGACCAAGAATGCAAGTCTCTCTC
CTAGCCTCTTACTCGGGGCTTCTTTCTCCTCCCTGTCCTGAGCTTCTACC
GACGTCCTAGTTAATAGGCTGAAAATATTCTGTAATTGCCCCATTACTAA
TCCACGTAATATATTTATTCCTTACATTCAACTTATTATTTAGCATTTTA
TGGCAACATTACCCGTTAGCAGGAGTCTTTCTTTCTCTCGCACTATCCCT
CTGTGTTTATATCTTCGGTATTCATAATCCATACGTCTCTAAACCTAATT
GAGCCTTATTGCTTGCTCTTGGTTGTCAAGATCTTCCTTTTCCATGTGTA
AAAGTTTCTACTTTAATTTATTTTCCTGACCTTGGTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_c11.g1 MSMg01no334_c11.g1 CHROMAT_FILE:
MSMg01no334_c11.g1 PHD_FILE: MSMg01no334_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:29 2005
         (283 letters)



>mm_chr5_117497663_117498346
          Length = 684

 Score =  507 bits (262), Expect = e-148
 Identities = 278/288 (96%), Gaps = 9/288 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatccactgaaaattacaccaatcatttattgactgaatgcatcatgtagggggtctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatccactgaaaattacaccaatcatttattgactgaatgcatcatgtagggggtctctc 260

                                                                       
Query: 61  actagatagatggagaccccctatatccaatatgatgatcggctgagttaagattcttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagatagatggagaccccctatatccaatatgatgatcggctgagttaagattcttga 320

                                                                       
Query: 121 ctgctcatcataggggctatgctctgagcactgcgctacaccacacatataataatcaca 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctcattataggggctatgctctgagcactgcgctacaccacacatataataatcaca 380

                                                                       
Query: 181 gtgccgactcttcacaggtactcaatgagctacggattccattcccccacctctgattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgccgactcttcacaggtactcaatgagctacggattccattcccccacctctgattct 440

                                                           
Query: 241 -----tttttgctgacagtggagttcagagcagtgacctgacccattc 283
                |    ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacat----gctgacagtggagttcagagcagtgacctgacccattc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)