BAC Information

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BAC

Clone NameMSMg01-334I02
Chromosome5 (Build37)
Map Location 45,494,179 - 45,494,794
singlet/doubletsinglet
Overlap genenone
Upstream geneTapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334I02.T7 (MSMg01no334_i02.b1)MSMg01-334I02.TJ (MSMg01no334_i02.g1)
ACCAG449985AG449986
length677703
length of high quality
(start - end)
354 (68 - 421)616 (74 - 689)
definitionCHROMAT_FILE: MSMg01no334_i02.b1 PHD_FILE: MSMg01no334_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:57 2005CHROMAT_FILE: MSMg01no334_i02.g1 PHD_FILE: MSMg01no334_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGA
TCAATTCGCATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTT
GTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTATAGCTCCCTTGTCAA
AGATCAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTG
TTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGAT
CACAGTTGCCCTGTAGTACAGTTTCAGGTCCGGCATGGTGATTCCACCAG
AGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTCGGTTTTTTGTTA
TTCCAGATGAATCTGCCGATTGCCATTTCTAATTCGTTGAAGAAATGAGT
TGGAATTCTGAGGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGA
TAGCCATTTTTACAATGTTGATCCTGCCAATCCATGAGCATGGGAGATCT
TTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTTAGAGACTTGAAGTT
CTTATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCCAAGGTATT
TTATATTATTTGTGACTATTGAGAAAG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTAGTATTGTAACTGTATTACCTTT
GTGGATTGCCTTCATATTATATTATTAACTATGTTCTATCTGTATGCATT
GCTAAGATGAGCTTGTTCCAACACTTTTTATGAGGCAGTCTCAACAGATC
TTGCTTGTGGCTTATACCACTTATGAACACATATATTATTTTAGTGGTAA
TCCATGTCACACCACATAAAATACATCGGAGTTTATAAAAATGTTGCAGA
ATAATACCTGCTTGGCTTAATGTAACTTATTGAGTTTGTGGCAGTTACAT
TTTCTCTTTTAGAAATATCCAGGCATTGATCAAATGAATGACTGCAGAGT
GACTATAAACTAAACTGACGAAAGAGAAGAGGAAGAAGAGAAAATGCCAA
ATAAGACAAAGTGGCAGGAAAACGGCAGAAAAAAAAATCCACTCATTTTC
AGTTTTCTTTCTAAATCAGACCATATCTCACCGTATGTTATCACTTGGTA
TGATGGGTCTTAAATATGTGGCTGGCTTGAGGATTTTTTTCCCTCCCTTT
CTGAAAAATTTGGGGGAGTTAAAGGCAAAGGAGGCAGTGAGGTTGTTAAA
CATTCTGATCAGGTTTCCTTCAGGGTCTTGCTGCTGGGAGAATGTCTTAT
GGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_i02.g1 MSMg01no334_i02.g1 CHROMAT_FILE:
MSMg01no334_i02.g1 PHD_FILE: MSMg01no334_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:57 2005
         (616 letters)



>mm_chr5_45493979_45494994
          Length = 1016

 Score = 1145 bits (592), Expect = 0.0
 Identities = 610/616 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttagtattgtaactgtattacctttgtggattgccttcatattatattattaactatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tgttagtattgtaactgtattacctttgtggattgccttcatattatattattaactatg 757

                                                                       
Query: 61  ttctatctgtatgcattgctaagatgagcttgttccaacactttttatgaggcagtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ttctatctgtatgcattgctaagatgagcttgttccaacactttttatgaggcagtctca 697

                                                                       
Query: 121 acagatcttgcttgtggcttataccacttatgaacacatatattattttagtggtaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acagatcttgcttgtggcttataccacttatgaacacatatattattttagtggtaatcc 637

                                                                       
Query: 181 atgtcacaccacataaaatacatcggagtttataaaaatgttgcagaataatacctgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atgtcacaccacataaaatacatcggagtttataaaaatgttgcagaataatacctgctt 577

                                                                       
Query: 241 ggcttaatgtaacttattgagtttgtggcagttacattttctcttttagaaatatccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggcttaatgtaacttattgagtttgtggcagttacattttctcttttagaaatatccagg 517

                                                                       
Query: 301 cattgatcaaatgaatgactgcagagtgactataaactaaactgacgaaagagaagagga 360
           ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 516 cattgatcaaatgaatgactgcagagtgactataaaccaaagtgaggaaagagaagagga 457

                                                                       
Query: 361 agaagagaaaatgccaaataagacaaagtggcaggaaaacggcagaaaaaaaaatccact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaagagaaaatgccaaataagacaaagtggcaggaaaacggcagaaaaaaaaatccact 397

                                                                       
Query: 421 cattttcagttttctttctaaatcagaccatatctcaccgtatgttatcacttggtatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cattttcagttttctttctaaatcagaccatatctcaccgtatgttatcacttggtatga 337

                                                                       
Query: 481 tgggtcttaaatatgtggctggcttgaggatttttttccctccctttctgaaaaatttgg 540
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 336 tgggtcttaaatatgtggttggcttgaggatttttttccctcgctttctgaaaaatttgg 277

                                                                       
Query: 541 gggagttaaaggcaaaggaggcagtgaggttgttaaacattctgatcaggtttccttcag 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 276 gggagttaaaggcaaaggaggcagtgaggttgttaaacattctgatcaggtttcctccag 217

                           
Query: 601 ggtcttgctgctggga 616
           ||||||||||||||||
Sbjct: 216 ggtcttgctgctggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)