BAC Information

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BAC

Clone NameMSMg01-334I24
Chromosome5 (Build37)
Map Location 43,541,644 - 43,712,784
singlet/doubletdoublet
Overlap geneEG665934, Cpeb2
Upstream geneEG636612, LOC433883
Downstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334I24.T7 (MSMg01no334_i24.b1)MSMg01-334I24.TJ (MSMg01no334_i24.g1)
ACCAG450028AG450029
length771698
length of high quality
(start - end)
193 (118 - 310)229 (352 - 580)
definitionCHROMAT_FILE: MSMg01no334_i24.b1 PHD_FILE: MSMg01no334_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:02 2005CHROMAT_FILE: MSMg01no334_i24.g1 PHD_FILE: MSMg01no334_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,712,592 - 43,712,784)(43,541,644 - 43,541,872)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGACCGGCGGAATTCA
GATTCTTTACAACACCATTGCTTTAAAACGTGCTACCTCTTCCTGGTTCT
GTATGTATTCTGACCCCAGGGTGTGGTCACCATGGAAGAATAAGAGTTGA
ATGGGAAAGGAGAATAGGAAAATTATTGGCTTCAAGTAAGCCGACAGGAG
CTTTGTGACTGCGTAAATTGAATTGACTCTGTTGTTGAATGCATCTCTGG
TGTTGGGAGATGTGCAAACTGAACTTGACTGGGCTCAGCCACCTCCAGCA
CTTAGAAAGATGNATGATTTAAAGAGAGAGAGAGAGAGAGAGAGAGAGAA
GGATGTAGGGAGGCCCGCAGGGAGGAAGGAAGTTAGTTTTTAATTTACTT
TTAATTTTTACCCCCCTCCTTCTTTCTCTATTACCTTACCCATTTTCCTT
CCTTTAATTTATCTCCCCTCCCTTTATTTTTTTTCCACCAATTTCATTCT
TTTTTTTTTCCCCTATTCTTTCTTTTTCTATACCTTATTTTCAACTTTGG
CGTTTTTTACATCTTCACACACTTACTTTATATTTTAAAAATATATCTCT
TCTACAAAAAAAATACATATTTCTTTCCTTATCTTTCTCATATCTCCCGA
CGCTTTATACTCCACACAAAAACACTTTTTTTTTTTTTTTTTTCTCAACG
TAAACATTTTCACATAACCCCTATTTCCCCCACCACATCCTCTTTTATAT
TCGCCGTTTTGGTGCATGTGG
GACTGGACTTCCCCTACGGGTGAACTATAGAAGGATTTGCANAAATAAGC
TTCAACATCACATTTGCTACTTTATTATTTATTATTATTTTGTTTGCCAT
GTAGGCTTTATTATTTTTTAATCACCCGTATTTATTTCACCACTGGCAAG
CTCTGAGAACAGTTCCTGGCAAACAGGAATTGATAATTAATAAATTGTCT
AAATCCTAGCTTAAATTCCAACTATTTATTACCTACATGTCTTGAGTATA
TAGATCAAGCTTTCCATTGCTTATGCTTCTCATACCGAAAGTGTGAATAN
ATGTTTGTCCCTCATAAAATCGGTATGAGGCTTCACTAAGAGAATTGCAT
ATGGAAATCTCTAGCATAAAGTAGAATTTTTAAAATGTGAATTTTGTTGC
AAAACTTCACAGATGGTCCTAGCATGCCTTAGAAAAGAAATCTGCTTGTT
TTGATATTTTCAGCAGAAAGAATCAATAAACATTTGTAAACACCAGCTCA
GCACTGAGCCCAAGAAGCACTCTTGGACAGAGGGTAACTGCCCTAAAGAA
GCAACAAAGCCTTAAGAGAAACAGATCCAATGGTTAAGGATTACACTTCC
CAGGAGAAGTGCTTACAAGGTATAGGAGTAGTTATCAGCAGACACACTTC
TCTAATGCGTATTTGAACTAACCAGACAGAGGACATACTGTCAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_i24.b1 MSMg01no334_i24.b1 CHROMAT_FILE:
MSMg01no334_i24.b1 PHD_FILE: MSMg01no334_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:02 2005
         (193 letters)



>mm_chr5_43712392_43712984
          Length = 593

 Score =  350 bits (181), Expect = e-101
 Identities = 190/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtgtggtcaccatggaagaataagagttgaatgggaaaggagaataggaaaattatt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 393 agggtgtggtcaccatggaagagtaagagttgaatgggaaaggagaataggaaaattatt 334

                                                                       
Query: 61  ggcttcaagtaagccgacaggagctttgtgactgcgtaaattgaattgactctgttgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggcttcaagtaagccgacaggagctttgtgactgcgtaaattgaattgactctgttgttg 274

                                                                       
Query: 121 aatgcatctctggtgttgggagatgtgcaaactgaacttgactgggctcagccacctcca 180
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aatgcagctctggtgtttggagatgtgcaaactgaacttgactgggctcagccacctcca 214

                        
Query: 181 gcacttagaaaga 193
           |||||||||||||
Sbjct: 213 gcacttagaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no334_i24.g1 MSMg01no334_i24.g1 CHROMAT_FILE:
MSMg01no334_i24.g1 PHD_FILE: MSMg01no334_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:02 2005
         (229 letters)



>mm_chr5_43541444_43542072
          Length = 629

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaatctctagcataaagtagaatttttaaaatgtgaattttgttgcaaaacttcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaaatctctagcataaagtagaatttttaaaatgtgaattttgttgcaaaacttcaca 260

                                                                       
Query: 61  gatggtcctagcatgccttagaaaagaaatctgcttgttttgatattttcagcagaaaga 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggtcctagcatgtcttagaaaagaaatctgcttgttttgatattttcagcagaaaga 320

                                                                       
Query: 121 atcaataaacatttgtaaacaccagctcagcactgagcccaagaagcactcttggacaga 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaataaacatttgtaaacaccggctcagcactgagcccaagaagcactcttggacaga 380

                                                            
Query: 181 gggtaactgccctaaagaagcaacaaagccttaagagaaacagatccaa 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtaactgccctaaagaagcaacaaagccttaagagaaacagatccaa 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)