Query= MSMg01no335_b05.b1 MSMg01no335_b05.b1 CHROMAT_FILE:
MSMg01no335_b05.b1 PHD_FILE: MSMg01no335_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:43 2005
(515 letters)
>mm_chr5_45139322_45140236
Length = 915
Score = 919 bits (475), Expect = 0.0
Identities = 506/519 (97%), Gaps = 6/519 (1%)
Strand = Plus / Minus
Query: 1 aatcttaaactcctgatcctcctgcctcccttggccaaatgctggaattgcaggaatgtg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatcttcaactcctgatcctcctgcctcccttggccaaatgctggaattgcaggaatgtg 561
Query: 61 ccacagttaccagctgcagctatttgtgttcaggaccatttgtaaagatttacatagtta 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 ccacagttaccagctgcagctatttgtgttcaggatcatttgtaaagatttacatagtta 501
Query: 121 tcatcatagtacacatgtacaaatttctgtcatatattgtcatttaaagtcacttctatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 500 tcatcatagtacacatgtacaaatttctgtcatatattgtcatttaaagtcatttctatg 441
Query: 181 taactcccttctgacctgggtatgacgtttaccgttagtctaaacaatttgactcaagct 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 taactcccttctgacctgggtatgaggtttaccgttagtctaaacaatttgactcaagct 381
Query: 241 tgattgtttgattttggagttgagttcgtcaacttcccagatattcagccactcatttaa 300
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 380 tgattgtttgattttggagttgagttcgtcaacttctcagatcttcagccactcatttaa 321
Query: 301 gaagttattgcaccactgttttctggtagtctaaacatgtgtgtgggcatgcccaaacac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 gaagttattgcaccactgttttctggtagtctaaacatgtgtgtgggcatgcccaa--ac 263
Query: 361 acacacacacacacacacacacacacacacacacacacacacactttgcacacctgttta 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 acacacacacacacacacacacacacacacacacacacacacactttgcagacctgttta 203
Query: 421 aagagagctgggatcctatctagatagagcatcttcctggtctgtatactgagggtataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aagagagctgggatcctatctagatagagcatcttcctggtctgtatactgagggtataa 143
Query: 481 aatccttatc----aattaaagaaatggatgtgacccac 515
|||||||||| |||||||||||||||||||||||||
Sbjct: 142 aatccttatcacttaattaaagaaatggatgtgacccac 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_b05.g1 MSMg01no335_b05.g1 CHROMAT_FILE:
MSMg01no335_b05.g1 PHD_FILE: MSMg01no335_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:43 2005
(476 letters)
>mm_chr5_44956749_44957624
Length = 876
Score = 905 bits (468), Expect = 0.0
Identities = 474/476 (99%)
Strand = Plus / Plus
Query: 1 ttcattgaataggtgcaaacaggtagttagatcccagagaatgtgtcttatcatgtaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcattgaataggtgcaaacaggtagttagatcccagagaatgtgtcttatcatgtaact 260
Query: 61 gtgggccagtggaatcctatgtaacccgagcagttacacctgcctattctatcaccaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggccagtggaatcctatgtaacccgagcagttacacctgcctattctatcaccaaga 320
Query: 121 atcccttgattccttagctccagagcctcttagcacccacaagagcatggatctccaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcccttgattccttagctccagagcctcttagcacccacaagagcatggatctccaact 380
Query: 181 actcttgaaagccaatccaaaccaaccaaacaaacaaaagatcctgtcctaatctttggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcttgaaagccaatccaaaccaaccaaacaaacaaaagatcctgtcctaatctttggc 440
Query: 241 aaaatagaaaagctcaccaatgagccacaaagaccctgaggtctgggtgagtgcagagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatagaaaagctcaccaatgagccacaaagaccctgaggtctgggtgagtgcagagga 500
Query: 301 agtagaagtagtttttgttcggaattgtttggggttagtgtagagggacaagacacactg 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtagaagtagtttttgttcagaattgtttggggttagtgtagagggacaagacacactg 560
Query: 361 caagctcttctttcttcaggttttaaatccttctatgtaagcactatgcaaataggaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagctcttctttcttcaggttttaaatccttctatgtaagcactatgcaaataggaaac 620
Query: 421 atatgggatacattcctttgacttgactcatcaaaatggtgtgtgtgtgtgtgtgt 476
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 atatgggatacattcctttgacttgactcatcaaaatggggtgtgtgtgtgtgtgt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
