BAC Information

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BAC

Clone NameMSMg01-335D03
Chromosome5 (Build37)
Map Location 96,674,439 - 96,674,762
singlet/doubletsinglet
Overlap geneMrpl1
Upstream geneLOC100041296, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335D03.T7 (MSMg01no335_d03.b1)MSMg01-335D03.TJ (MSMg01no335_d03.g1)
ACCAG450507AG450508
length713721
length of high quality
(start - end)		606 (36 - 641)388 (78 - 465)
definitionCHROMAT_FILE: MSMg01no335_d03.b1 PHD_FILE: MSMg01no335_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:52 2005CHROMAT_FILE: MSMg01no335_d03.g1 PHD_FILE: MSMg01no335_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAT
CTTTCCCAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTT
CTCAGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTA
TATACTGGATTACATTGATGGATTTCCGTATATTAAACCATCCCTGAATC
CCTGGGATGAAACCGACTTGGTCAGGATGGATGATTGTTTTGATGTGTTC
TTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTTTGCATCGATATTCA
TAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTGTTTTTGTGGT
TTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTACC
TTCCATTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGAATTAGGTCTT
CTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATATGGTCCTGGGCTT
TTTTTGGCTCGGAGACTATTAATAACTGCTTCTATTTCTTTAGGGGATAT
GGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGT
ATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTTGTGAG
CATAGCCTTTTGTATAATGATCTGAAGGTATTCTGGATTCCTTCCCGATT
TGTTGCTATCCCN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGGTTATATTTACCACTTTG
AGACAGAAGAAAAATGAGTTTAAACTACTCAAACTACGCTCCACATGAAA
GTTCTAAACCTGGCTCTTGGAGCGTAAAACCAGCCAGCACAGGACTAAAG
AGATAGATAGGTGAGCAGCTTGGAGCAGTTCCCGTTCTTGTAGAGGATCT
ACCTGAATATGGTCCCCACACAGTGGGTCATAACTGCCTGCAACTCCAGT
TCCAGGACCTCTGGCATCCTCTTCTGATCCCTGCAGGTTCTTTCACGAAC
ACAGTAAGTACCCAGACATACACTCAGACACAAACATACACACATACAAC
AAGGTTCTTAAAAGATTTTTTTTTTAATTTATGTGGATGTGTGTGTGTGT
GTGTGTGTGTGTGTNNTNNNTNNNNTNNNTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTGTTTNTTTTGTT
TTTGTTNTTGTTTTTTGTTTTTTTTTTTGTTTGTTTGTTTTTTTTTTTTT
TTTTTTGGTGTTTTTTTTGGGTTTTTTTTTTGCTGTGGCGTTTTTTTTTC
TTTTTTCTTTTTTTTTTTTTTTTGCCCGCTTTTTTTCCTTTTTTCCGTTT
TTGTCTTCCCCTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_d03.g1 MSMg01no335_d03.g1 CHROMAT_FILE:
MSMg01no335_d03.g1 PHD_FILE: MSMg01no335_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:52 2005
         (388 letters)



>mm_chr5_96674439_96675226
          Length = 788

 Score =  565 bits (292), Expect = e-165
 Identities = 316/324 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctggttatatttaccactttgagacagaagaaaaatgagtttaaactactcaaactac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctggttatatttaccactttgagacagaagaaaaatgagtttaaactactcaaactac 265

                                                                       
Query: 61  gctccacatgaaagttctaaacctggctcttggagcgtaaaaccagccagcacaggacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctccacatgaaagttctaaacctggctcttggagcgtaaaaccagccagcacaggacta 205

                                                                       
Query: 121 aagagatagataggtgagcagcttggagcagttcccgttcttgtagaggatctacctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aagagatagataggtgagcagcttggagcagttcccgttcttgtagaggatctacctgaa 145

                                                                       
Query: 181 tatggtccccacacagtgggtcataactgcctgcaactccagttccaggacctctggcat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 144 tatggtccccacacagtgggtcataactgcctgtaactccagttccagggcctctggcat 85

                                                                       
Query: 241 cctcttctgatccctgcaggttctttcacgaacacagtaagtacccagacatacactcag 300
           |||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||| |
Sbjct: 84  cctcttctgatccctgcaggttctttcatgaacacagtaaccacccagacgtacactcgg 25

                                   
Query: 301 acacaaacatacacacatacaaca 324
            |||||||||||||||||||||||
Sbjct: 24  gcacaaacatacacacatacaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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